Co-expression analysis

Gene ID	TaAffx.76554.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g54320: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.56
%ile	82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.97	TaAffx.76554.1.A1_at	BJ307578	-	-	1e+0	At5g54320	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.5909.3.A1_x_at	BJ298528	-	-	7e+0	At4g27350	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.9217.1.S1_at	BT009612.1	-	-	1e-1	At2g22490	CYCD2	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.11311.1.A1_at	BQ169821	-	-	5e+0	At4g00940	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	TaAffx.13383.1.A1_at	BG904557	-	-	8e-1	At1g17800	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.7428.2.A1_a_at	CA736575	-	-	2e+0	At3g04780	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.5	98.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.9	97.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.6	97.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage