Co-expression analysis

Gene ID	TaAffx.7419.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g18690: AGP25 (ARABINOGALACTAN PROTEINS 25) (HF=2e+0)
Module size	8 genes
NF	0.58
%ile	83.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.96	TaAffx.7419.1.A1_x_at	CK216646	-	-	2e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.97	Ta.581.2.S1_a_at	CD862705	hypothetical LOC543355	-	9e-3	At2g35370	GDCH	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.581.1.S1_at	AY123417.1	hypothetical LOC543355	-	1e-7	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.97	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.3916.2.S1_x_at	CK213268	-	-	4e-1	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.4255.1.S1_x_at	BE591014	-	-	7e-3	At1g75690	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.3581.3.S1_x_at	CA598998	-	-	4e-7	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.4	99.8	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
21.6	99.7	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
16.9	99.6	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM298055	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM298054	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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