Co-expression analysis

Gene ID	TaAffx.72705.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g05760: nucleic acid binding / zinc ion binding (HF=5e+0)
Module size	36 genes
NF	0.30
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.83	TaAffx.72705.1.A1_at	CK163761	-	-	5e+0	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.93	TaAffx.51911.1.S1_at	CA716547	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.92	TaAffx.28512.1.S1_at	CA659249	-	-	2e-1	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.93	TaAffx.59475.1.S1_at	CA599957	-	-	3e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	TaAffx.110665.1.S1_at	CA656430	-	-	4e+0	At2g33250	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	TaAffx.13785.2.S1_at	CA708591	-	-	7e-8	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	TaAffx.105503.1.S1_at	CA733364	-	-	1e+0	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	TaAffx.110614.4.S1_at	CA605907	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.65688.1.S1_x_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.93	Ta.11199.2.S1_at	CA734885	-	-	7e+0	At5g08315	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.91	Ta.4549.2.S1_a_at	CA605921	-	-	4e+0	At2g41990	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.120245.1.S1_at	BJ234869	-	-	1e-1	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.91	TaAffx.30811.1.S1_at	CA621874	-	-	2e-1	At3g19070	cell wall protein-related	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.90	TaAffx.112085.1.S1_at	CA627212	-	-	4e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.90	TaAffx.85933.1.S1_at	CA618346	-	-	4e+0	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.90	TaAffx.117321.1.S1_s_at	BQ606659	-	-	4e+0	At1g71780	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	TaAffx.61664.1.S1_at	CA629036	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	TaAffx.82721.1.S1_at	CA668034	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	TaAffx.37304.1.A1_at	BJ286713	-	-	4e+0	At4g33460	ATNAP13	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	TaAffx.107008.1.S1_at	CA707795	-	-	7e-2	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.93	TaAffx.84919.1.S1_at	CA627238	-	-	2e+1	At5g39920	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.94	TaAffx.110652.1.S1_at	CA656567	-	-	1e-2	At2g23690	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.91	TaAffx.112820.3.S1_at	CA623506	-	-	4e+0	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.91	TaAffx.80666.1.S1_at	CA694180	-	-	7e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.91	TaAffx.28239.1.S1_at	CA663013	-	-	2e+0	At1g11785	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.114049.1.S1_at	CA599641	-	-	5e+0	At4g33560	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.92	TaAffx.120295.1.S1_at	BJ232977	-	-	2e+1	At5g42504	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	TaAffx.24121.1.S1_at	CA724779	-	-	2e-1	At1g11590	pectin methylesterase, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.92	TaAffx.69755.1.S1_at	BE213672	-	-	7e+0	At4g15770	RNA binding / protein binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	99.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.5	96.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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