Co-expression analysis

Gene ID TaAffx.7266.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62840: phosphoglycerate/bisphosphoglycerate mutase family protein (HF=9e-1)
Module size 12 genes
NF 0.35
%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.86TaAffx.7266.1.S1_atCA663550--9e-1At5g62840phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.4666.80.91TaAffx.30708.1.S1_atCA622731--2e-7At4g01480AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5)O.I.H.G.S.X.
0.4565.20.89TaAffx.108170.4.S1_atCA689645--2e+1At3g17609HYH (HY5-HOMOLOG)O.I.H.G.S.X.
0.4362.20.91TaAffx.30005.1.S1_atCA630801--1e+0At4g00840zinc ion bindingO.I.H.G.S.X.
0.4058.40.93TaAffx.110179.1.S1_atCA662677--3e-8At5g16340AMP-binding protein, putativeO.I.H.G.S.X.
0.3549.80.93TaAffx.51913.1.S1_x_atCA716536--8e-1At5g56110ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)O.I.H.G.S.X.
0.3142.70.92TaAffx.7150.1.S1_atCA667568--4e+0At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.3040.90.92Ta.7501.2.S1_atBJ271612--9e+0At5g19875unknown proteinO.I.H.G.S.X.
0.2939.20.92TaAffx.95641.1.S1_atCA620605--3e-7At5g23950C2 domain-containing proteinO.I.H.G.S.X.
0.2735.60.92TaAffx.114317.1.S1_atCA595026--7e-2At1g64200VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)O.I.H.G.S.X.
0.2430.30.93TaAffx.109026.1.S1_atCA663686--9e-1At4g35165unknown proteinO.I.H.G.S.X.
0.1517.10.91TaAffx.121220.2.S1_atCA677165Harpin binding protein 1-4e+0At5g50030invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.399.4GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
10.999.3GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
8.498.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.098.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.998.7GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.598.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM143499Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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