Co-expression analysis

Gene ID	TaAffx.7266.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62840: phosphoglycerate/bisphosphoglycerate mutase family protein (HF=9e-1)
Module size	12 genes
NF	0.35
%ile	57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.86	TaAffx.7266.1.S1_at	CA663550	-	-	9e-1	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.91	TaAffx.30708.1.S1_at	CA622731	-	-	2e-7	At4g01480	AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.89	TaAffx.108170.4.S1_at	CA689645	-	-	2e+1	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.91	TaAffx.30005.1.S1_at	CA630801	-	-	1e+0	At4g00840	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	TaAffx.110179.1.S1_at	CA662677	-	-	3e-8	At5g16340	AMP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	TaAffx.51913.1.S1_x_at	CA716536	-	-	8e-1	At5g56110	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.7150.1.S1_at	CA667568	-	-	4e+0	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.92	Ta.7501.2.S1_at	BJ271612	-	-	9e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	TaAffx.95641.1.S1_at	CA620605	-	-	3e-7	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	TaAffx.114317.1.S1_at	CA595026	-	-	7e-2	At1g64200	VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	TaAffx.109026.1.S1_at	CA663686	-	-	9e-1	At4g35165	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.91	TaAffx.121220.2.S1_at	CA677165	Harpin binding protein 1	-	4e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	99.4	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
10.9	99.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9	98.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM143499	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1	96.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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