Co-expression analysis

Gene ID TaAffx.7239.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g09984: LCR34 (Low-molecular-weight cysteine-rich 34) (HF=8e-1)
Module size 9 genes
NF 0.12
%ile 24.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.86TaAffx.7239.1.S1_atCA664369--8e-1At4g09984LCR34 (Low-molecular-weight cysteine-rich 34)O.I.H.G.S.X.
0.4362.20.92TaAffx.27377.1.S1_atCA677598--1e+1At5g01530chlorophyll A-B binding protein CP29 (LHCB4)O.I.H.G.S.X.
0.2227.10.93TaAffx.112374.1.S1_atCA624514--3e-1At4g20280TAF11 (TBP-ASSOCIATED FACTOR 11)O.I.H.G.S.X.
0.1618.20.94Ta.7193.3.S1_atCA718160--1e+1At5g08400unknown proteinO.I.H.G.S.X.
0.1011.30.95Ta.30411.1.S1_atCK209297--5e+0At5g62280unknown proteinO.I.H.G.S.X.
0.089.40.94Ta.3501.3.A1_atCA658638--3e-1At5g08330TCP family transcription factor, putativeO.I.H.G.S.X.
0.067.60.94TaAffx.105451.1.S1_atCA734135--1e+0At3g06730thioredoxin family proteinO.I.H.G.S.X.
0.067.60.94TaAffx.50210.1.S1_atCA744417--7e-2At1g60880AGL56O.I.H.G.S.X.
0.045.80.93TaAffx.111583.1.S1_x_atCA637262--1e+1At5g02440unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.199.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.099.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.598.3GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
6.098.0GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.897.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage