Co-expression analysis

Gene ID	TaAffx.72097.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g41450: zinc finger (C3HC4-type RING finger) family protein (HF=8e+0)
Module size	6 genes
NF	0.15
%ile	28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.96	TaAffx.72097.1.S1_at	BJ260927	-	-	8e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	TaAffx.58795.1.S1_at	CA615520	-	-	7e-2	At3g51710	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	TaAffx.3444.1.S1_at	BQ801852	-	-	2e-6	At1g02080	transcriptional regulator-related	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	Ta.15821.1.S1_at	BQ236446	-	-	6e-4	At2g46060	transmembrane protein-related	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.97	Ta.7416.1.A1_at	BJ265665	-	-	2e+0	At5g63530	ATFP3	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.97	Ta.5661.1.S1_at	BQ802737	-	-	1e-16	At3g43240	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.2	98.5	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0	97.4	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1618621_s_at, orthologous to the query gene, TaAffx.72097.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	1618621_s_at	At5g41450	-	-	6e+0	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1609457_at	At5g41450	hypothetical protein LOC100260374	-	1e-10	At1g74640	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612862_at	At5g41450	hypothetical protein LOC100251298	-	1e-3	At2g45010	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1611604_at	At5g41450	hypothetical protein LOC100249067	-	1e+0	At4g21790	TOM1 (TOBAMOVIRUS MULTIPLICATION 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1608888_at	At5g41450	hypothetical protein LOC100258013	-	2e-13	At4g25130	peptide methionine sulfoxide reductase, putative	O.I.	H.G.	S.X.	Please select
0.10	10.3	1611885_at	At5g41450	hypothetical protein LOC100263250	-	6e-27	At1g06820	CRTISO (CAROTENOID ISOMERASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage