Co-expression analysis

Gene ID	TaAffx.71195.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g40830: RHC1A (HF=1e-2)
Module size	13 genes
NF	0.14
%ile	27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.92	TaAffx.71195.1.S1_at	BE492326	-	-	1e-2	At2g40830	RHC1A	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.93	Ta.6108.1.S1_a_at	BJ307502	-	-	3e+0	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.6536.2.S1_at	BJ307344	-	-	7e-2	At3g04590	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.29552.1.S1_x_at	BE446813	-	-	6e-1	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.95	Ta.6512.1.S1_at	CK216205	-	-	7e-1	At1g14060	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	TaAffx.79226.1.S1_at	CA719465	-	-	4e-3	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.94	TaAffx.30638.1.S1_at	BJ302006	Myb transcription factor	-	3e-1	At5g66000	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	Ta.12871.1.S1_x_at	CA654208	-	-	5e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.97	Ta.7378.12.S1_at	BQ295477	-	-	5e-26	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.96	Ta.5543.1.A1_at	CK154361	-	-	1e-1	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.96	Ta.30565.2.S1_s_at	BJ310870	-	-	2e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	Ta.4996.1.S1_x_at	BJ217969	-	-	3e+0	At2g42870	PAR1 (PHY RAPIDLY REGULATED 1)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.95	Ta.8499.1.A1_at	BJ251403	-	-	2e+0	At1g70505	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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