Co-expression analysis

Gene ID	TaAffx.7030.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g40780: LHT1 (HF=1e-2)
Module size	6 genes
NF	0.01
%ile	3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.69	TaAffx.7030.1.S1_at	CA670474	-	-	1e-2	At5g40780	LHT1	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.4257.1.S1_at	CK159198	-	-	1e-18	At5g39040	ATTAP2	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.94	Ta.4355.1.S1_at	AJ579380.1	glutathione synthetase	-	3e-4	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.12817.1.S1_at	BT009426.1	-	-	1e-34	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	O.I.	H.G.	S.X.	Please select
-	0.7	0.91	Ta.12796.1.S1_s_at	BE430492	-	-	8e-16	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.86	TaAffx.55895.1.S1_x_at	CA659769	-	-	7e-2	At2g38290	ATAMT2 (AMMONIUM TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250915	TcLr1_7dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9	96.1	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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