Co-expression analysis

Gene ID	TaAffx.70061.25.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g44460: calcium-binding protein, putative (HF=3e+0)
Module size	44 genes
NF	0.16
%ile	29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	0.87	TaAffx.70061.25.S1_at	CA604492	-	-	3e+0	At5g44460	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.89	TaAffx.76.4.S1_x_at	CA617304	-	-	2e-1	At4g14380	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	TaAffx.8243.1.S1_at	CA629977	-	-	2e-1	At1g53680	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.92	TaAffx.51589.1.S1_at	BQ168323	-	-	6e+0	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.85651.1.S1_at	CA620840	-	-	1e+1	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	Ta.24041.1.A1_x_at	CA722251	-	-	1e+0	At4g36240	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.106849.3.S1_at	BJ216171	-	-	1e-1	At4g39410	WRKY13	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	TaAffx.118799.1.A1_at	BJ307744	-	-	2e-5	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	Ta.11296.3.S1_at	CA659571	-	-	1e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.65565.2.S1_at	BJ232957	-	-	3e-1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.93	TaAffx.31472.1.S1_at	CA615400	-	-	4e+0	At5g19315	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.83097.1.S1_at	CA662094	-	-	7e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.93	TaAffx.38113.1.A1_at	BJ249594	-	-	1e+0	At1g54230	DNA binding	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	TaAffx.105558.1.S1_x_at	CA732718	-	-	9e-1	At2g28570	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.93	TaAffx.107724.1.S1_x_at	CA696363	-	-	4e-2	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.30013.1.S1_at	CK213051	-	-	1e-18	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.10460.1.S1_at	BJ252154	-	-	3e+0	At3g54840	ARA6	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.12407.1.S1_x_at	BJ266791	-	-	6e-4	At2g45710	40S ribosomal protein S27 (RPS27A)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	Ta.4063.3.S1_s_at	CA732547	-	-	8e-1	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	TaAffx.55930.1.S1_at	CA659349	-	-	6e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.25947.1.A1_at	CA594770	-	-	4e-1	At5g65205	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.94	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	TaAffx.111590.1.S1_at	CA637180	-	-	1e+0	At1g01990	-	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.107724.1.S1_at	CA696363	-	-	4e-2	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.91	Ta.25001.2.A1_x_at	CB412199	-	-	2e+0	At1g62981	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	Ta.3501.3.A1_at	CA658638	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.90	Ta.3033.1.S1_at	BE398741	-	-	5e-1	At2g05752	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.84292.1.S1_at	CA640524	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.93	TaAffx.81752.1.S1_at	CA682283	-	-	4e+0	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	TaAffx.15727.1.A1_x_at	CA722526	-	-	3e-1	At5g15581	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	Ta.5357.2.S1_x_at	CA653210	-	-	1e-3	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.3414.3.S1_a_at	CA659684	-	-	1e+0	At5g53742	-	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.96	Ta.22722.1.A1_at	CA498647	-	-	4e-1	At1g03120	ATRAB28	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.95	TaAffx.106781.1.S1_at	BJ255281	-	-	2e+1	At5g41650	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.94	Ta.30766.1.S1_x_at	CN011188	-	-	1e+0	At3g12400	ELC	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.95	Ta.6796.1.S1_at	CA640825	-	-	5e+0	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	TaAffx.61855.2.S1_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.16397.2.S1_at	CA605664	-	-	8e+0	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.94	Ta.8557.1.A1_at	BQ162054	-	-	4e+0	At5g15290	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.11104.1.A1_at	CA683093	-	-	2e-8	At4g17640	CKB2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.8	97.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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