Co-expression analysis

Gene ID TaAffx.69951.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g22570: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=2e+0)
Module size 10 genes
NF 0.26
%ile 42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4260.90.89TaAffx.69951.1.S1_atAJ613060--2e+0At3g22570protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5273.70.90TaAffx.78088.1.S1_atCA737721--2e-1At1g11820catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.4565.20.91TaAffx.7339.1.S1_atCA661590SGT1-1 protein-8e+0At1g02250anac005 (Arabidopsis NAC domain containing protein 5)O.I.H.G.S.X.
0.4260.90.92TaAffx.57127.1.S1_atCA636127--2e-2At5g12470unknown proteinO.I.H.G.S.X.
0.3854.70.92TaAffx.109678.1.S1_s_atCA671055--1e+1At5g09460transcription factor/ transcription regulatorO.I.H.G.S.X.
0.3753.00.90Ta.3076.3.S1_atCA670610--3e+0At3g45851unknown proteinO.I.H.G.S.X.
0.3040.90.90Ta.28938.2.S1_atCA684040--3e+0At4g01310ribosomal protein L5 family proteinO.I.H.G.S.X.
0.2125.50.91Ta.11182.1.A1_atCK160034--2e-4At1g68730zinc finger (DNL type) family proteinO.I.H.G.S.X.
0.1213.30.91Ta.22882.1.S1_atCA711156--5e+0At3g05230signal peptidase subunit family proteinO.I.H.G.S.X.
0.0910.40.92Ta.8368.2.S1_atCA624505--2e-4At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.398.8GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.897.9GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.797.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM143526Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.996.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM143512Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.495.2GSM143513Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM143511Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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