Co-expression analysis

Gene ID	TaAffx.6885.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg00520: - (HF=2e-27)
Module size	34 genes
NF	0.68
%ile	91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	0.96	TaAffx.6885.1.S1_at	CA671515	-	-	2e-27	Atcg00520	-	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.98	Ta.28363.1.A1_x_at	BG904047	-	-	1e-1	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.98	Ta.20429.2.S1_at	BE430528	-	-	1e-21	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.98	Ta.27761.3.S1_x_at	CK213899	-	-	5e-9	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Ta.27660.1.S1_at	CK216184	ribulose-1,5-bisphosphate carboxylase activase	-	5e-89	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.	Please select
0.76	90.1	0.97	Ta.1139.1.S1_at	BJ263196	-	-	5e-14	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.97	Ta.27660.1.S1_x_at	CK216184	ribulose-1,5-bisphosphate carboxylase activase	-	5e-89	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.97	Ta.28363.1.A1_at	BG904047	-	-	1e-1	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.30795.1.S1_at	BG905417	-	-	6e-139	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.98	Ta.1139.1.S1_x_at	BJ263196	-	-	5e-14	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.347.2.S1_a_at	BJ252257	-	-	1e+0	At5g61410	RPE	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.27761.1.S1_x_at	CK213184	-	-	7e-6	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.23158.1.S1_at	X51608.1	phosphoribulokinase	-	4e-40	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.28363.2.S1_at	BE217056	-	-	1e-4	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.20639.1.S1_x_at	CA675788	-	-	9e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.98	Ta.27761.2.S1_x_at	CK211226	-	-	5e-3	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.98	Ta.27646.1.S1_x_at	CK211847	-	-	7e-10	At1g61520	LHCA3	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.97	Ta.2412.1.S1_x_at	CD898752	-	-	9e-6	At4g32260	ATP synthase family	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.97	Ta.2402.3.S1_x_at	CK216367	-	-	5e-22	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.20639.3.S1_a_at	CA635230	-	-	8e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.66	84.1	0.98	Ta.28697.3.S1_at	CK211399	-	-	8e-25	At3g61470	LHCA2	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.97	Ta.347.3.S1_x_at	BQ162741	-	-	3e+0	At5g20190	binding	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.97	Ta.1971.2.S1_x_at	CK215131	-	-	4e-1	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.97	Ta.1989.1.S1_a_at	CA674427	-	-	7e-6	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.30808.1.S1_s_at	CK211832	-	-	4e-15	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.1988.3.S1_at	CK214871	-	-	2e-20	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.85.1.S1_at	CK208348	23kDa oxygen evolving protein of photosystem II	-	2e-10	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.27646.1.S1_at	CK211847	-	-	7e-10	At1g61520	LHCA3	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.97	Ta.20639.2.A1_at	BQ620062	-	-	3e-7	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.97	TaAffx.80290.2.S1_at	CA705716	-	-	7e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	TaAffx.108107.3.S1_x_at	CA714538	-	-	4e+0	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	Ta.1971.1.S1_a_at	CA620810	-	-	5e-1	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.96	Ta.28265.1.S1_at	CK213341	oxygen-evolving complex precursor	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.1978.1.S1_a_at	BJ251994	-	-	1e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.3	97.6	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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