Co-expression analysis

Gene ID	TaAffx.6605.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g19100: unknown protein (HF=3e-4)
Module size	6 genes
NF	0.04
%ile	11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.85	TaAffx.6605.1.S1_at	CA682009	-	-	3e-4	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	TaAffx.16182.1.A1_at	BG607174	-	-	8e-2	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.94	Ta.4668.3.S1_a_at	BJ278063	-	-	3e+0	At3g15900	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.94	Ta.10182.1.S1_at	BJ242478	-	-	2e+0	At3g51410	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	Ta.7528.1.A1_at	BJ320713	-	-	6e-1	At2g46080	-	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	TaAffx.96.1.S1_at	AJ613655	-	-	9e-1	At5g55870	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.0	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage