Co-expression analysis

Gene ID TaAffx.65594.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g43410: ethylene-responsive factor, putative (HF=1e+0)
Module size 6 genes
NF 0.05
%ile 14.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.86TaAffx.65594.1.S1_atBJ236677--1e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.067.60.95TaAffx.9323.1.S1_atCA602698--4e+0At1g70890MLP43 (MLP-LIKE PROTEIN 43)O.I.H.G.S.X.
0.056.70.96Ta.28571.1.S1_s_atCA639817--8e-5At3g47810MAG1 (MAIGO 1)O.I.H.G.S.X.
0.034.70.95TaAffx.14645.1.S1_atCA737282--2e+0At3g32100unknown proteinO.I.H.G.S.X.
0.034.70.93Ta.9488.3.S1_x_atCA741820--1e-3At4g10610CID12O.I.H.G.S.X.
0.034.70.95Ta.7540.3.S1_a_atCK205921--2e-8At3g07220transcriptional activator, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
3.996.1GSM138193genotype B33 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.896.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1617526_s_at, orthologous to the query gene, TaAffx.65594.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4666.51617526_s_atAt5g43410hypothetical protein LOC100250396-8e-1At2g10920unknown proteinO.I.H.G.S.X.
0.7792.31621559_atAt5g43410hypothetical protein LOC100262734-3e-51At3g28860ABCB19O.I.H.G.S.X.
0.7591.31619231_atAt5g43410hypothetical protein LOC100248953-2e+0At3g60440-O.I.H.G.S.X.
0.6183.21614094_atAt5g43410hypothetical protein LOC100255834-6e-43At4g08150KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)O.I.H.G.S.X.
0.5679.41609418_s_atAt5g43410hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538-4e+0At5g35375unknown proteinO.I.H.G.S.X.
0.5375.21613074_atAt5g43410similar to PDF-1e-1At2g42840PDF1 (PROTODERMAL FACTOR 1)O.I.H.G.S.X.
0.4868.81607851_atAt5g43410hypothetical protein LOC100266538-9e-2At1g04660glycine-rich proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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