CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.65594.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g43410: ethylene-responsive factor, putative (HF=1e+0)

Module size 6 genes

NF 0.05

%ile 14.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.86 TaAffx.65594.1.S1_at BJ236677 - - 1e+0 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.06 7.6 0.95 TaAffx.9323.1.S1_at CA602698 - - 4e+0 At1g70890 MLP43 (MLP-LIKE PROTEIN 43) O.I. H.G. S.X.
0.05 6.7 0.96 Ta.28571.1.S1_s_at CA639817 - - 8e-5 At3g47810 MAG1 (MAIGO 1) O.I. H.G. S.X.
0.03 4.7 0.95 TaAffx.14645.1.S1_at CA737282 - - 2e+0 At3g32100 unknown protein O.I. H.G. S.X.
0.03 4.7 0.93 Ta.9488.3.S1_x_at CA741820 - - 1e-3 At4g10610 CID12 O.I. H.G. S.X.
0.03 4.7 0.95 Ta.7540.3.S1_a_at CK205921 - - 2e-8 At3g07220 transcriptional activator, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.5 99.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.8 97.9 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
3.9 96.1 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8 96.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6 92.9 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1617526_s_at, orthologous to the query gene, TaAffx.65594.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 66.5 1617526_s_at At5g43410 hypothetical protein LOC100250396 - 8e-1 At2g10920 unknown protein O.I. H.G. S.X.
0.77 92.3 1621559_at At5g43410 hypothetical protein LOC100262734 - 3e-51 At3g28860 ABCB19 O.I. H.G. S.X.
0.75 91.3 1619231_at At5g43410 hypothetical protein LOC100248953 - 2e+0 At3g60440 - O.I. H.G. S.X.
0.61 83.2 1614094_at At5g43410 hypothetical protein LOC100255834 - 6e-43 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) O.I. H.G. S.X.
0.56 79.4 1609418_s_at At5g43410 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein O.I. H.G. S.X.
0.53 75.2 1613074_at At5g43410 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.
0.48 68.8 1607851_at At5g43410 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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