Co-expression analysis

Gene ID	TaAffx.65594.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g43410: ethylene-responsive factor, putative (HF=1e+0)
Module size	6 genes
NF	0.05
%ile	14.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.86	TaAffx.65594.1.S1_at	BJ236677	-	-	1e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.95	TaAffx.9323.1.S1_at	CA602698	-	-	4e+0	At1g70890	MLP43 (MLP-LIKE PROTEIN 43)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.96	Ta.28571.1.S1_s_at	CA639817	-	-	8e-5	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	TaAffx.14645.1.S1_at	CA737282	-	-	2e+0	At3g32100	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.93	Ta.9488.3.S1_x_at	CA741820	-	-	1e-3	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.7540.3.S1_a_at	CK205921	-	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.9	96.1	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig18358_x_at, orthologous to the query gene, TaAffx.65594.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig18358_x_at	At5g43410	-	-	2e-1	At3g52380	CP33	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig22985_at	At5g43410	-	-	4e-1	At4g30590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig21166_at	At5g43410	-	-	2e-9	At5g61810	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	HU14D04u_at	At5g43410	-	-	3e-1	At2g37585	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig7267_at	At5g43410	-	-	1e-3	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.11	9.4	EBro08_SQ009_L23_at	At5g43410	-	-	1e+0	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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