CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.65594.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g43410: ethylene-responsive factor, putative (HF=1e+0)

Module size 6 genes

NF 0.05

%ile 14.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.86 TaAffx.65594.1.S1_at BJ236677 - - 1e+0 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.06 7.6 0.95 TaAffx.9323.1.S1_at CA602698 - - 4e+0 At1g70890 MLP43 (MLP-LIKE PROTEIN 43) O.I. H.G. S.X.
0.05 6.7 0.96 Ta.28571.1.S1_s_at CA639817 - - 8e-5 At3g47810 MAG1 (MAIGO 1) O.I. H.G. S.X.
0.03 4.7 0.95 TaAffx.14645.1.S1_at CA737282 - - 2e+0 At3g32100 unknown protein O.I. H.G. S.X.
0.03 4.7 0.93 Ta.9488.3.S1_x_at CA741820 - - 1e-3 At4g10610 CID12 O.I. H.G. S.X.
0.03 4.7 0.95 Ta.7540.3.S1_a_at CK205921 - - 2e-8 At3g07220 transcriptional activator, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.2	0.86	TaAffx.65594.1.S1_at	BJ236677	-	-	1e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.06	7.6	0.95	TaAffx.9323.1.S1_at	CA602698	-	-	4e+0	At1g70890	MLP43 (MLP-LIKE PROTEIN 43)	O.I.	H.G.	S.X.
0.05	6.7	0.96	Ta.28571.1.S1_s_at	CA639817	-	-	8e-5	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.
0.03	4.7	0.95	TaAffx.14645.1.S1_at	CA737282	-	-	2e+0	At3g32100	unknown protein	O.I.	H.G.	S.X.
0.03	4.7	0.93	Ta.9488.3.S1_x_at	CA741820	-	-	1e-3	At4g10610	CID12	O.I.	H.G.	S.X.
0.03	4.7	0.95	Ta.7540.3.S1_a_at	CK205921	-	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.5 99.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.8 97.9 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
3.9 96.1 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8 96.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6 92.9 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
11.5	99.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.9	96.1	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g43410, orthologous to the query gene, TaAffx.65594.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g43410 834360 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.
0.61 76.7 At2g35970 818170 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.58 73.8 At4g14180 827058 AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1) Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair. O.I. H.G. S.X.
0.58 73.8 At5g40130 3771383 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 At1g43600 840944 NLI interacting factor (NIF) family protein F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPV O.I. H.G. S.X.
0.56 73.0 At4g23580 828458 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF O.I. H.G. S.X.
0.55 70.6 At1g35900 840492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 At2g34580 818022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV O.I. H.G. S.X.
0.55 70.6 At3g59180 825087 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.54 69.5 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB O.I. H.G. S.X.
0.54 69.5 At3g24330 822022 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO O.I. H.G. S.X.
0.54 69.5 At4g17585 827476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.54 69.5 At1g50750 841497 unknown protein F:unknown;P:unknown;C:unknown;OPMFBA O.I. H.G. S.X.
0.54 69.5 At2g07686 3768051 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.54 69.5 At2g24000 816934 scpl22 (serine carboxypeptidase-like 22) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. H.G. S.X.
0.53 68.6 At4g22500 - - - O.I. H.G. S.X.
0.52 67.4 At1g09410 837463 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. H.G. S.X.
0.52 67.4 At1g61950 842490 CPK19 member of Calcium Dependent Protein Kinase O.I. H.G. S.X.
0.52 67.4 At2g10450 815504 14-3-3 protein, putative / grf15, putative F:amino acid binding;P:unknown;C:plasma membrane;MPFO O.I. H.G. S.X.
0.52 67.4 At2g15660 816059 AGL95 (AGAMOUS-LIKE 95) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P O.I. H.G. S.X.
0.52 67.4 At2g30430 817594 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 At5g44140 834437 ATPHB7 (PROHIBITIN 7) F:unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I, membrane;BOMFPAV O.I. H.G. S.X.
0.51 66.3 At3g22340 3768898 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 At1g79170 844258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPM O.I. H.G. S.X.
0.49 63.5 At1g11690 837713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. H.G. S.X.
0.49 63.5 At5g37640 833742 UBQ9 polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. O.I. H.G. S.X.
0.48 62.5 At5g60240 836146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.48 62.5 At1g50680 841490 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV O.I. H.G. S.X.
0.48 62.5 At3g06970 819882 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. H.G. S.X.
0.48 62.5 At2g07737 3768151 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 At2g16200 816117 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, Golgi-associated vesicle;PO O.I. H.G. S.X.
0.47 61.2 At1g32390 840132 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 At3g44140 823535 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.47 61.2 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. H.G. S.X.
0.46 59.8 At3g28280 822454 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.45 58.3 At3g45570 823699 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.45 58.3 At3g23650 821945 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.45 58.3 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.45 58.3 At1g33820 840277 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBP O.I. H.G. S.X.
0.44 57.2 At2g44880 819097 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:endomembrane system;POFM O.I. H.G. S.X.
0.44 57.2 At4g19770 827721 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA O.I. H.G. S.X.
0.44 57.2 At2g01500 814678 PFS2 (PRETTY FEW SEEDS 2) PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. O.I. H.G. S.X.
0.44 57.2 At1g55060 841949 UBQ12 (UBIQUITIN 12) Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product O.I. H.G. S.X.
0.44 57.2 At3g19070 821441 cell wall protein-related F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA O.I. H.G. S.X.
0.43 55.3 At1g18310 838411 glycosyl hydrolase family 81 protein F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPM O.I. H.G. S.X.
0.43 55.3 At2g43730 818975 lectin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.43 55.3 At5g08490 830748 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. H.G. S.X.
0.42 53.9 At4g10845 826681 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.42 53.9 At3g26190 822220 CYP71B21 putative cytochrome P450 O.I. H.G. S.X.
0.41 52.4 At1g74480 843789 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM O.I. H.G. S.X.
0.41 52.4 At1g57906 842163 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 At3g47240 823877 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.37 45.0 At3g49440 824106 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.37 45.0 At5g51900 835265 cytochrome P450 family F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOA O.I. H.G. S.X.
0.37 45.0 At2g07685 3768050 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 At3g20690 821616 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.29 30.3 At5g07310 830622 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. H.G. S.X.
0.29 30.3 At4g07360 3770409 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.28 30.3 At3g42730 823306 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.28 30.3 At2g19420 816461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.27 26.2 At1g61410 842435 tolA protein-related F:protein binding, DNA binding;P:double-strand break repair, DNA recombination;C:nucleus;BPMFO O.I. H.G. S.X.
0.26 24.4 At3g55650 824731 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At5g43410	834360	ethylene-responsive factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	H.G.	S.X.
0.61	76.7	At2g35970	818170	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.58	73.8	At4g14180	827058	AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1)	Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.	O.I.	H.G.	S.X.
0.58	73.8	At5g40130	3771383	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	At1g43600	840944	NLI interacting factor (NIF) family protein	F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPV	O.I.	H.G.	S.X.
0.56	73.0	At4g23580	828458	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF	O.I.	H.G.	S.X.
0.55	70.6	At1g35900	840492	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.55	70.6	At2g34580	818022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV	O.I.	H.G.	S.X.
0.55	70.6	At3g59180	825087	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.54	69.5	At5g38500	833838	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB	O.I.	H.G.	S.X.
0.54	69.5	At3g24330	822022	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO	O.I.	H.G.	S.X.
0.54	69.5	At4g17585	827476	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.54	69.5	At1g50750	841497	unknown protein	F:unknown;P:unknown;C:unknown;OPMFBA	O.I.	H.G.	S.X.
0.54	69.5	At2g07686	3768051	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.54	69.5	At2g24000	816934	scpl22 (serine carboxypeptidase-like 22)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	H.G.	S.X.
0.53	68.6	At4g22500	-	-	-	O.I.	H.G.	S.X.
0.52	67.4	At1g09410	837463	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	H.G.	S.X.
0.52	67.4	At1g61950	842490	CPK19	member of Calcium Dependent Protein Kinase	O.I.	H.G.	S.X.
0.52	67.4	At2g10450	815504	14-3-3 protein, putative / grf15, putative	F:amino acid binding;P:unknown;C:plasma membrane;MPFO	O.I.	H.G.	S.X.
0.52	67.4	At2g15660	816059	AGL95 (AGAMOUS-LIKE 95)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	H.G.	S.X.
0.52	67.4	At2g30430	817594	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	At5g44140	834437	ATPHB7 (PROHIBITIN 7)	F:unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I, membrane;BOMFPAV	O.I.	H.G.	S.X.
0.51	66.3	At3g22340	3768898	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	At1g79170	844258	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPM	O.I.	H.G.	S.X.
0.49	63.5	At1g11690	837713	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	H.G.	S.X.
0.49	63.5	At5g37640	833742	UBQ9	polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements.	O.I.	H.G.	S.X.
0.48	62.5	At5g60240	836146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.48	62.5	At1g50680	841490	AP2 domain-containing transcription factor, putative	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV	O.I.	H.G.	S.X.
0.48	62.5	At3g06970	819882	RNA binding / nucleic acid binding / nucleotide binding	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	H.G.	S.X.
0.48	62.5	At2g07737	3768151	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	At2g16200	816117	protein binding / structural molecule	F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, Golgi-associated vesicle;PO	O.I.	H.G.	S.X.
0.47	61.2	At1g32390	840132	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	At3g44140	823535	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.47	61.2	At5g66370	836769	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	H.G.	S.X.
0.46	59.8	At3g28280	822454	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	At3g45570	823699	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.45	58.3	At3g23650	821945	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.45	58.3	At3g57900	824959	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	At1g33820	840277	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBP	O.I.	H.G.	S.X.
0.44	57.2	At2g44880	819097	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:endomembrane system;POFM	O.I.	H.G.	S.X.
0.44	57.2	At4g19770	827721	glycosyl hydrolase family 18 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA	O.I.	H.G.	S.X.
0.44	57.2	At2g01500	814678	PFS2 (PRETTY FEW SEEDS 2)	PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.	O.I.	H.G.	S.X.
0.44	57.2	At1g55060	841949	UBQ12 (UBIQUITIN 12)	Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product	O.I.	H.G.	S.X.
0.44	57.2	At3g19070	821441	cell wall protein-related	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA	O.I.	H.G.	S.X.
0.43	55.3	At1g18310	838411	glycosyl hydrolase family 81 protein	F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPM	O.I.	H.G.	S.X.
0.43	55.3	At2g43730	818975	lectin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.43	55.3	At5g08490	830748	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	H.G.	S.X.
0.42	53.9	At4g10845	826681	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.42	53.9	At3g26190	822220	CYP71B21	putative cytochrome P450	O.I.	H.G.	S.X.
0.41	52.4	At1g74480	843789	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM	O.I.	H.G.	S.X.
0.41	52.4	At1g57906	842163	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.38	46.7	At3g47240	823877	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.37	45.0	At3g49440	824106	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.37	45.0	At5g51900	835265	cytochrome P450 family	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOA	O.I.	H.G.	S.X.
0.37	45.0	At2g07685	3768050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	At3g20690	821616	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.29	30.3	At5g07310	830622	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	H.G.	S.X.
0.29	30.3	At4g07360	3770409	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.28	30.3	At3g42730	823306	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.28	30.3	At2g19420	816461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.27	26.2	At1g61410	842435	tolA protein-related	F:protein binding, DNA binding;P:double-strand break repair, DNA recombination;C:nucleus;BPMFO	O.I.	H.G.	S.X.
0.26	24.4	At3g55650	824731	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	TaAffx.65594.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g43410: ethylene-responsive factor, putative (HF=1e+0)
Module size	6 genes
NF	0.05
%ile	14.6

Co-expression analysis

Gene ID TaAffx.65594.1.S1_at Gene name Homology with ArabidopsisSimilar to At5g43410: ethylene-responsive factor, putative (HF=1e+0) Module size 6 genes NF 0.05 %ile 14.6

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID TaAffx.65594.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g43410: ethylene-responsive factor, putative (HF=1e+0)

Module size 6 genes

NF 0.05

%ile 14.6

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays