Co-expression analysis

Gene ID	TaAffx.64716.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g10620: protein kinase family protein (HF=3e-13)
Module size	28 genes
NF	0.34
%ile	55.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	0.74	TaAffx.64716.1.S1_at	BJ279767	-	-	3e-13	At1g10620	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.84	TaAffx.51608.1.S1_at	CA723020	-	-	3e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.86	TaAffx.56735.1.S1_at	CA645491	-	-	4e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.83	Ta.22712.1.S1_at	CA605507	-	-	5e-2	At5g38980	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.84	TaAffx.95676.1.S1_at	BE445977	-	-	6e-1	At4g18450	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.82	Ta.18726.1.S1_at	CA641262	-	-	2e+0	At2g25650	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.87	Ta.26186.1.A1_at	CD452604	-	-	2e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.83	Ta.18530.1.S1_a_at	CA638314	-	-	3e+0	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.86	TaAffx.84085.1.S1_at	CA645173	-	-	4e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.85	TaAffx.79037.1.S1_at	CA723500	-	-	1e+1	At3g61415	ASK21 (ARABIDOPSIS SKP1-LIKE 21)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.85	TaAffx.56345.1.S1_at	CA653725	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.87	Ta.18965.2.S1_at	CA608704	-	-	7e-2	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.87	TaAffx.51582.1.S1_x_at	CA723376	-	-	2e-1	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.83	Ta.5252.3.S1_x_at	CA609779	-	-	2e+1	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.86	Ta.14132.3.S1_x_at	CA606089	-	-	4e-3	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.85	Ta.989.2.S1_x_at	CA697991	-	-	4e+0	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.85	TaAffx.123818.1.A1_at	BE403488	-	-	4e+0	At1g77525	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.84	Ta.19622.1.S1_at	CA654295	-	-	1e-5	At1g66470	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.86	Ta.21168.1.S1_at	CA602412	-	-	1e+0	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.83	TaAffx.105909.1.S1_at	CA727947	-	-	4e+0	At5g05250	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.88	Ta.28728.1.S1_at	AF139815.1	-	-	2e-23	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.86	Ta.16625.1.S1_at	CA609923	-	-	1e+1	At4g19038	LCR15 (Low-molecular-weight cysteine-rich 15)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.81	TaAffx.111469.1.S1_at	CA639886	-	-	3e+0	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.89	Ta.26128.1.A1_at	CD452868	-	-	2e+0	At2g03350	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.89	Ta.28728.1.S1_x_at	AF139815.1	-	-	2e-23	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.85	Ta.5619.1.S1_x_at	BE430514	-	-	1e+0	At2g40370	LAC5 (laccase 5)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.93	Ta.26178.1.A1_at	CD453855	-	-	6e+0	At5g65274	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.85	Ta.20986.1.S1_x_at	CA641147	-	-	4e+0	At2g05440	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.4	99.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
17.2	99.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
14.9	99.5	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.6	97.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage