Co-expression analysis

Gene ID TaAffx.64310.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g04025: unknown protein (HF=1e+0)
Module size 7 genes
NF 0.20
%ile 34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.10.77TaAffx.64310.2.S1_atBJ305933--1e+0At2g04025unknown proteinO.I.H.G.S.X.
0.4666.80.93Ta.6956.2.S1_x_atBJ304062--5e+0At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.3346.90.87Ta.30653.1.S1_atAJ606023.1hypothetical LOC543043-9e-2At2g33870ArRABA1h (Arabidopsis Rab GTPase homolog A1h)O.I.H.G.S.X.
0.3244.40.89TaAffx.64310.1.A1_s_atBJ311963--3e+0At1g48953unknown proteinO.I.H.G.S.X.
0.2939.20.91Ta.6956.2.S1_atBJ304062--5e+0At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.1112.40.90Ta.28561.2.S1_atBJ244783--8e-1At2g39520unknown proteinO.I.H.G.S.X.
0.045.80.90TaAffx.118012.1.S1_s_atCA695336--2e+0At3g57920SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.399.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.196.4GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.096.3GSM314274tissue type: floral bracts, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM138178genotype A88 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.294.8GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM138207genotype B11 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.692.9GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615481_at, orthologous to the query gene, TaAffx.64310.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.81615481_atAt2g04025hypothetical protein LOC100264345-3e-1At1g30070SGS domain-containing proteinO.I.H.G.S.X.
0.9198.81609765_s_atAt2g04025leucoanthocyanidin dioxygenase-6e-20At4g22880LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)O.I.H.G.S.X.
0.6787.91612134_atAt2g04025similar to anthocyanidin reductase-6e-3At2g02400cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.6081.91607732_atAt2g04025chalcone synthase-7e-60At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.5577.31619642_atAt2g04025hypothetical protein LOC100241575-3e-28At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.2022.41614131_atAt2g04025hypothetical protein LOC100247551-6e-2At2g36760UGT73C2 (UDP-glucosyl transferase 73C2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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