Co-expression analysis

Gene ID	TaAffx.64310.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g04025: unknown protein (HF=1e+0)
Module size	7 genes
NF	0.20
%ile	34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.77	TaAffx.64310.2.S1_at	BJ305933	-	-	1e+0	At2g04025	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.93	Ta.6956.2.S1_x_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.87	Ta.30653.1.S1_at	AJ606023.1	hypothetical LOC543043	-	9e-2	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.89	TaAffx.64310.1.A1_s_at	BJ311963	-	-	3e+0	At1g48953	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.91	Ta.6956.2.S1_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.90	Ta.28561.2.S1_at	BJ244783	-	-	8e-1	At2g39520	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.90	TaAffx.118012.1.S1_s_at	CA695336	-	-	2e+0	At3g57920	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
50.3	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.1	96.4	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM138178	genotype A88 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage