Co-expression analysis

Gene ID	TaAffx.63964.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g19950: zinc finger (C3HC4-type RING finger) family protein (HF=4e-1)
Module size	6 genes
NF	0.35
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.9	0.97	TaAffx.63964.1.S1_at	BJ322405	-	-	4e-1	At3g19950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.20656.1.S1_at	CA686685	-	-	5e-1	At5g53470	ACBP1 (ACYL-COA BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.14507.1.S1_at	CK205369	-	-	1e-33	At5g50960	NBP35 (NUCLEOTIDE BINDING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.11481.1.A1_at	BQ170184	-	-	4e-1	At3g59800	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.9783.3.S1_x_at	BJ285979	-	-	4e+0	At2g21465	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	TaAffx.129161.1.S1_at	CK210255	Serine/threonine protein kinase 1	-	8e-22	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
2.8	93.6	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.7	93.3	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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