Co-expression analysis

Gene ID TaAffx.61822.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g49230: HRB1 (HYPERSENSITIVE TO RED AND BLUE) (HF=4e+0)
Module size 6 genes
NF 0.01
%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.72TaAffx.61822.2.S1_atCD453880--4e+0At5g49230HRB1 (HYPERSENSITIVE TO RED AND BLUE)O.I.H.G.S.X.
0.056.70.87Ta.6866.3.A1_atCA619945--1e+0At5g57440GS1O.I.H.G.S.X.
0.045.80.85TaAffx.128545.2.S1_s_atCA738288--1e+1At3g27968unknown proteinO.I.H.G.S.X.
0.034.70.87TaAffx.5094.1.S1_atCA723120--3e+0At1g26740structural constituent of ribosomeO.I.H.G.S.X.
0.012.40.87TaAffx.23474.1.S1_atCA734776--1e-2At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
-0.70.87TaAffx.25375.1.S1_atCA701244--4e+0At4g25130peptide methionine sulfoxide reductase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.199.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.998.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.998.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.998.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM143524Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM143513Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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