Co-expression analysis

Gene ID	TaAffx.59675.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g46873: - (HF=4e+0)
Module size	21 genes
NF	0.48
%ile	74.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	83.9	0.93	TaAffx.59675.1.S1_at	CA597159	-	-	4e+0	At5g46873	-	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.96	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.95	TaAffx.8469.1.S1_at	CA624919	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.95	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.95	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.95	TaAffx.58533.1.S1_at	CA618813	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.94	TaAffx.114767.1.S1_at	CA723425	-	-	3e-3	At4g17600	LIL3:1	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.95	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	TaAffx.34241.2.S1_x_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	Ta.1965.1.S1_at	CA634037	-	-	6e-3	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.112304.2.S1_x_at	CA619303	-	-	3e-1	At2g16850	PIP2	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.4913.1.S1_at	CA728728	-	-	2e+1	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	TaAffx.34241.2.S1_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	TaAffx.84292.1.S1_at	CA640524	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.4	95.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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