Co-expression analysis

Gene ID TaAffx.59511.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g66890: - (HF=1e-3)
Module size 34 genes
NF 0.32
%ile 52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8994.60.86TaAffx.59511.2.S1_atCA682522--1e-3At1g66890-O.I.H.G.S.X.
0.5475.50.92TaAffx.112556.1.S1_atCA622998--4e+0At1g67760ATP binding / protein binding / unfolded protein bindingO.I.H.G.S.X.
0.4969.70.92TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.4767.90.89TaAffx.81141.1.S1_atCA689176--1e+0At3g52760integral membrane Yip1 family proteinO.I.H.G.S.X.
0.4666.80.92TaAffx.112720.1.S1_atCA621571--7e-5At5g39580peroxidase, putativeO.I.H.G.S.X.
0.4362.20.89Ta.3769.2.S1_atCA696979--1e+0At5g44080bZIP transcription factor family proteinO.I.H.G.S.X.
0.4260.90.91TaAffx.112085.1.S1_atCA627212--4e+0At4g15710unknown proteinO.I.H.G.S.X.
0.4260.90.89TaAffx.35384.1.S1_atBQ608589--2e-5At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.4058.40.90TaAffx.9337.1.S1_atCA602090--4e+0At2g30130ASL5O.I.H.G.S.X.
0.3956.10.92TaAffx.109026.1.S1_atCA663686--9e-1At4g35165unknown proteinO.I.H.G.S.X.
0.3956.10.90TaAffx.12644.1.S1_atBJ247681--4e-1At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.3956.10.89TaAffx.78397.1.S1_atCA659643--2e+1At1g74900OTP43 (organelle transcript processing defect 43)O.I.H.G.S.X.
0.3956.10.93TaAffx.105943.1.S1_atCA727514--2e+1At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.H.G.S.X.
0.3854.70.91TaAffx.7371.1.S1_atCA660740--4e-6At2g28305unknown proteinO.I.H.G.S.X.
0.3854.70.91TaAffx.110614.4.S1_atCA605907--3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.3854.70.90Ta.3074.2.S1_x_atCA646915--1e-3At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
0.3753.00.90Ta.20380.1.S1_atCA679288--9e-4At3g58040SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)O.I.H.G.S.X.
0.3549.80.91TaAffx.9430.1.S1_atCA599036--3e-1At5g55570unknown proteinO.I.H.G.S.X.
0.3549.80.90Ta.3861.1.S1_atBQ162138--2e+0At5g65870ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)O.I.H.G.S.X.
0.3549.80.91TaAffx.50318.1.S1_atCA742779--3e+0At3g25400-O.I.H.G.S.X.
0.3549.80.91TaAffx.55497.1.S1_atCA665286--3e-1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3346.90.92TaAffx.24851.1.S1_atCA711013--2e-1At1g64500glutaredoxin family proteinO.I.H.G.S.X.
0.3142.70.92TaAffx.59475.1.S1_atCA599957--3e-1At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.3040.90.91TaAffx.65627.1.S1_atBJ235571--5e+0At3g51380IQD20 (IQ-domain 20)O.I.H.G.S.X.
0.3040.90.92Ta.16453.1.S1_atCA606648--1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.2839.20.92TaAffx.135182.1.S1_atCA673772--2e+1At5g23640unknown proteinO.I.H.G.S.X.
0.2735.60.89TaAffx.143995.11.A1_atAY645945floral homeotic protein-9e-7At5g60120TOE2O.I.H.G.S.X.
0.2633.60.92TaAffx.64914.1.S1_atBJ270115--4e+0At1g51915cryptdin protein-relatedO.I.H.G.S.X.
0.2329.00.92TaAffx.13750.2.A1_atCA647055--4e+0At5g51545LPA2 (low psii accumulation2)O.I.H.G.S.X.
0.2329.00.92Ta.22988.1.S1_atCA692783--3e+0At1g70830MLP28 (MLP-LIKE PROTEIN 28)O.I.H.G.S.X.
0.2125.50.92Ta.28942.3.S1_atCA698075--1e+0At3g04500RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1719.80.92TaAffx.27409.1.S1_atCA677175--4e+0At1g02405proline-rich family proteinO.I.H.G.S.X.
0.1213.30.90Ta.28142.2.S1_atCA644586--3e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.0910.40.91TaAffx.30610.1.S1_atCA623663--1e+1At5g60890MYB34 (MYB DOMAIN PROTEIN 34)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.498.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.296.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM314274tissue type: floral bracts, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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