Co-expression analysis

Gene ID	TaAffx.59244.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g19580: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) (HF=5e-12)
Module size	33 genes
NF	0.38
%ile	60.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.89	TaAffx.59244.2.S1_at	CA625584	-	-	5e-12	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.92	Ta.14429.2.S1_at	CK194622	-	-	6e-17	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	Ta.11247.1.A1_at	BJ251293	-	-	2e-8	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.93	Ta.17343.1.S1_at	CA619861	-	-	1e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	TaAffx.81752.1.S1_at	CA682283	-	-	4e+0	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	TaAffx.57555.1.S1_at	CA618738	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	TaAffx.86790.1.S1_at	CA600461	-	-	1e+1	At5g18362	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	TaAffx.30610.1.S1_at	CA623663	-	-	1e+1	At5g60890	MYB34 (MYB DOMAIN PROTEIN 34)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.109025.3.S1_at	CA702122	-	-	2e-1	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.4913.1.S1_at	CA728728	-	-	2e+1	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.93	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.24833.1.S1_at	CA711224	-	-	7e-1	At1g68945	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.93	TaAffx.83840.1.S1_at	CA649783	-	-	4e+0	At1g28170	sulfotransferase family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.12942.1.S1_at	CA594614	-	-	2e-25	At5g53900	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.85817.1.S1_at	CA619362	-	-	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	TaAffx.23743.1.S1_at	CA731059	-	-	3e-1	At2g28790	osmotin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.93	TaAffx.65462.1.S1_at	BJ245082	-	-	9e-1	At3g18300	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.110652.1.S1_at	CA656567	-	-	1e-2	At2g23690	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	TaAffx.58533.1.S1_at	CA618813	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	TaAffx.8469.1.S1_at	CA624919	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.93	Ta.26670.1.A1_at	CD491523	-	-	9e-20	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.14305.1.A1_at	BU099616	-	-	2e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.1	97.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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