Co-expression analysis

Gene ID TaAffx.59237.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g36570: ATRL3 (ARABIDOPSIS RAD-LIKE 3) (HF=3e-1)
Module size 6 genes
NF 0.10
%ile 22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.79TaAffx.59237.1.S1_atCA605498--3e-1At4g36570ATRL3 (ARABIDOPSIS RAD-LIKE 3)O.I.H.G.S.X.
0.2532.10.94Ta.13862.1.S1_x_atCA621701--2e+0At2g04790unknown proteinO.I.H.G.S.X.
0.1011.30.94Ta.14146.3.S1_x_atCA697368--2e+1At5g24313unknown proteinO.I.H.G.S.X.
0.0910.40.94TaAffx.51397.1.S1_atCA725473--4e-49At1g23490ATARF1 (ADP-RIBOSYLATION FACTOR 1)O.I.H.G.S.X.
0.0910.40.92TaAffx.29911.1.S1_atCA632981--2e+1At5g09470mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.045.80.94TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.499.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
13.699.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
12.599.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.998.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.998.4GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.997.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM138193genotype B33 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.695.6GSM298089Leaf tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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