Co-expression analysis

Gene ID TaAffx.58659.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g46000: ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) (HF=2e+0)
Module size 6 genes
NF 0.02
%ile 6.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.73TaAffx.58659.1.S1_atCA617521--2e+0At3g46000ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)O.I.H.G.S.X.
0.045.80.93TaAffx.51434.1.S1_atCA725005--1e+1At5g28919-O.I.H.G.S.X.
0.023.60.93Ta.3598.2.S1_x_atCA611880--4e+0At4g36900RAP2.10 (related to AP2 10)O.I.H.G.S.X.
0.012.40.95TaAffx.38158.4.S1_x_atCA630021--1e-3At2g44330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.012.40.94Ta.3836.1.S1_atBJ254410--2e+0At3g24460TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.012.40.93TaAffx.84143.1.S1_atCA714749--2e+1At4g05070unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1606916_at, orthologous to the query gene, TaAffx.58659.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.81606916_atAt3g46000--1e-1At3g10640VPS60.1O.I.H.G.S.X.
0.9198.81617497_atAt3g46000hypothetical protein LOC100248145-4e-22At1g04410malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.8394.61610035_x_atAt3g46000hypothetical protein LOC100248145-4e-22At1g04410malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.6081.91612870_s_atAt3g46000hypothetical protein LOC100267310-3e+0At2g18380transcription factorO.I.H.G.S.X.
0.5779.81620272_atAt3g46000hypothetical protein LOC100252883-2e+0At2g37330ALS3 (ALUMINUM SENSITIVE 3)O.I.H.G.S.X.
0.4361.51611243_atAt3g46000--3e-14At5g24650mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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