Co-expression analysis

Gene ID	TaAffx.58659.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g46000: ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) (HF=2e+0)
Module size	6 genes
NF	0.02
%ile	6.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.73	TaAffx.58659.1.S1_at	CA617521	-	-	2e+0	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.51434.1.S1_at	CA725005	-	-	1e+1	At5g28919	-	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	Ta.3598.2.S1_x_at	CA611880	-	-	4e+0	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	TaAffx.38158.4.S1_x_at	CA630021	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.3836.1.S1_at	BJ254410	-	-	2e+0	At3g24460	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	TaAffx.84143.1.S1_at	CA714749	-	-	2e+1	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig5538_at, orthologous to the query gene, TaAffx.58659.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	Contig5538_at	At3g46000	-	-	1e-24	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig7559_at	At3g46000	-	-	4e-43	At3g26560	ATP-dependent RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig7370_at	At3g46000	-	-	3e+0	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig12013_s_at	At3g46000	-	-	3e+0	At5g38080	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig5326_at	At3g46000	-	-	2e-11	At4g38600	KAK (KAKTUS)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig7336_s_at	At3g46000	-	-	5e+0	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig5629_at	At3g46000	-	-	1e-3	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	rbah19i01_s_at	At3g46000	-	-	3e-1	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12269_s_at	At3g46000	-	-	8e-10	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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