Co-expression analysis

Gene ID TaAffx.58659.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g46000: ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) (HF=2e+0)
Module size 6 genes
NF 0.02
%ile 6.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.73TaAffx.58659.1.S1_atCA617521--2e+0At3g46000ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)O.I.H.G.S.X.
0.045.80.93TaAffx.51434.1.S1_atCA725005--1e+1At5g28919-O.I.H.G.S.X.
0.023.60.93Ta.3598.2.S1_x_atCA611880--4e+0At4g36900RAP2.10 (related to AP2 10)O.I.H.G.S.X.
0.012.40.95TaAffx.38158.4.S1_x_atCA630021--1e-3At2g44330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.012.40.94Ta.3836.1.S1_atBJ254410--2e+0At3g24460TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.012.40.93TaAffx.84143.1.S1_atCA714749--2e+1At4g05070unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig5538_at, orthologous to the query gene, TaAffx.58659.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.0Contig5538_atAt3g46000--1e-24At1g30470SIT4 phosphatase-associated family proteinO.I.H.G.S.X.
0.5572.0Contig7559_atAt3g46000--4e-43At3g26560ATP-dependent RNA helicase, putativeO.I.H.G.S.X.
0.5066.9Contig7370_atAt3g46000--3e+0At2g14910unknown proteinO.I.H.G.S.X.
0.4762.2Contig12013_s_atAt3g46000--3e+0At5g38080unknown proteinO.I.H.G.S.X.
0.4762.2Contig5326_atAt3g46000--2e-11At4g38600KAK (KAKTUS)O.I.H.G.S.X.
0.4458.9Contig7336_s_atAt3g46000--5e+0At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.4356.4Contig5629_atAt3g46000--1e-3At3g01940unknown proteinO.I.H.G.S.X.
0.4255.2rbah19i01_s_atAt3g46000--3e-1At4g02530chloroplast thylakoid lumen proteinO.I.H.G.S.X.
0.3240.3Contig12269_s_atAt3g46000--8e-10At4g30850HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage