Co-expression analysis

Gene ID TaAffx.58659.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g46000: ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) (HF=2e+0)
Module size 6 genes
NF 0.02
%ile 6.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.73TaAffx.58659.1.S1_atCA617521--2e+0At3g46000ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)O.I.H.G.S.X.
0.045.80.93TaAffx.51434.1.S1_atCA725005--1e+1At5g28919-O.I.H.G.S.X.
0.023.60.93Ta.3598.2.S1_x_atCA611880--4e+0At4g36900RAP2.10 (related to AP2 10)O.I.H.G.S.X.
0.012.40.95TaAffx.38158.4.S1_x_atCA630021--1e-3At2g44330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.012.40.94Ta.3836.1.S1_atBJ254410--2e+0At3g24460TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.012.40.93TaAffx.84143.1.S1_atCA714749--2e+1At4g05070unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.1945.1.A1_at, orthologous to the query gene, TaAffx.58659.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.9HgAffx.1945.1.A1_atAt3g46000--8e-1At4g01410harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.6786.1HgAffx.11255.1.S1_atAt3g46000--5e+0At3g09050unknown proteinO.I.H.G.S.X.
0.5778.8PsAffx.C20000118_s_atAt3g46000--6e-2At3g56440AtATG18dO.I.H.G.S.X.
0.5778.8PsAffx.psMA010xD09f_atAt3g46000--1e+0At1g07985Expressed proteinO.I.H.G.S.X.
0.5678.2HgAffx.15698.1.S1_atAt3g46000--4e+0At2g26670TED4 (REVERSAL OF THE DET PHENOTYPE 4)O.I.H.G.S.X.
0.5374.2HgAffx.19746.1.S1_atAt3g46000--2e+0At2g44745WRKY family transcription factorO.I.H.G.S.X.
0.5374.2GmaAffx.31414.1.A1_atAt3g46000--3e-1At5g03990unknown proteinO.I.H.G.S.X.
0.5071.7PsAffx.psHB004xH08f_atAt3g46000--5e+0At3g61840unknown proteinO.I.H.G.S.X.
0.4665.5GmaAffx.15790.1.A1_atAt3g46000--2e+0At1g70790C2 domain-containing proteinO.I.H.G.S.X.
0.4463.3GmaAffx.14280.1.S1_atAt3g46000--1e-8At1g22710SUC2 (SUCROSE-PROTON SYMPORTER 2)O.I.H.G.S.X.
0.4463.3PsAffx.C34000064_atAt3g46000--2e+0At5g29560calcium ion bindingO.I.H.G.S.X.
0.4158.1GmaAffx.1910.1.S1_atAt3g46000--2e-1At5g25980TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)O.I.H.G.S.X.
0.4057.1GmaAffx.14602.1.S1_atAt3g46000--2e-1At3g45851unknown proteinO.I.H.G.S.X.
0.3447.2HgAffx.19033.4.A1_x_atAt3g46000--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.3346.1HgAffx.19033.4.A1_atAt3g46000--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.2939.0PsAffx.C3000160_s_atAt3g46000--4e+0At5g42860unknown proteinO.I.H.G.S.X.
0.2839.0GmaAffx.47834.1.A1_atAt3g46000--3e-1At4g16330oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.2329.9GmaAffx.93289.1.S1_atAt3g46000--2e-33At3g26370unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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