Co-expression analysis

Gene ID	TaAffx.58540.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g12510: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=5e-3)
Module size	6 genes
NF	0.02
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.87	TaAffx.58540.1.S1_at	CA618733	-	-	5e-3	At4g12510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.92	TaAffx.85432.1.S1_at	CA622812	-	-	4e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.94	TaAffx.36750.1.S1_at	BJ315863	-	-	4e+0	At2g32050	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	TaAffx.78579.1.S1_at	CA703076	-	-	1e-1	At1g76670	transporter-related	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.94	Ta.18274.1.S1_at	CA633027	-	-	3e+0	At5g52480	-	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	TaAffx.55278.1.S1_x_at	CA668780	Plasma membrane H+-ATPase	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
10.0	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4	97.7	GSM246388	SB10_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.0	97.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM138202	genotype F44 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.4	96.8	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM246396	SB57_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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