Co-expression analysis

Gene ID TaAffx.58515.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g13270: unknown protein (HF=7e-1)
Module size 6 genes
NF 0.09
%ile 20.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.90TaAffx.58515.1.S1_atCA618943--7e-1At4g13270unknown proteinO.I.H.G.S.X.
0.3651.90.97Ta.9306.2.S1_x_atBE493280--6e+0At5g46870RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1618.20.94TaAffx.80013.1.S1_atCA704301--1e+0At4g18335unknown proteinO.I.H.G.S.X.
0.0910.40.97Ta.1709.1.S1_atCK208738--2e-53At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.034.70.97Ta.27101.10.S1_x_atAJ613323--1e-26At5g10980histone H3O.I.H.G.S.X.
0.034.70.97Ta.1709.1.S1_x_atCK208738--2e-53At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.999.4GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.997.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM111210genotype B11 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.196.4GSM143508Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.896.0GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.495.2GSM111199genotype A77 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM143511Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.094.3GSM143512Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622580_at, orthologous to the query gene, TaAffx.58515.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7992.71622580_atAt4g13270--2e-1At3g32090transcription factor-relatedO.I.H.G.S.X.
0.4361.51609373_atAt4g13270hypothetical protein LOC100261333-0Atcg00900-O.I.H.G.S.X.
0.4260.11620015_atAt4g13270--4e+0At5g66400RAB18 (RESPONSIVE TO ABA 18)O.I.H.G.S.X.
0.3548.51606688_atAt4g13270ripening induced protein-2e-1At4g33750-O.I.H.G.S.X.
0.3446.81619988_s_atAt4g13270--5e+0Atcg00540-O.I.H.G.S.X.
0.2632.01622744_atAt4g13270similar to Os01g0789500 /// similar to ribosomal protein S3-2e-42Atcg00820-O.I.H.G.S.X.
0.2632.01618120_atAt4g13270hypothetical protein LOC100256073-3e-8At3g49601-O.I.H.G.S.X.
0.2632.01608509_atAt4g13270hypothetical protein LOC100261523-8e-2At1g51150DegP6 (DegP protease 6)O.I.H.G.S.X.
0.2530.51613911_s_atAt4g13270similar to Os01g0789500 /// similar to ribosomal protein S3-2e-42Atcg00820-O.I.H.G.S.X.
0.2530.51619740_atAt4g13270hypothetical protein LOC100260241-2e-1At2g27535ribosomal protein L10A family proteinO.I.H.G.S.X.
0.2530.51609479_s_atAt4g13270--1e+0At3g10590myb family transcription factorO.I.H.G.S.X.
0.2428.71621347_atAt4g13270hypothetical protein LOC100248637-1e+0At5g40630ubiquitin family proteinO.I.H.G.S.X.
0.2327.51609196_atAt4g13270hypothetical protein LOC100256073-3e-1At3g14020NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)O.I.H.G.S.X.
0.1212.11618820_x_atAt4g13270--9e-2At1g34350unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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