Co-expression analysis

Gene ID TaAffx.5827.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g04990: - (HF=8e-1)
Module size 6 genes
NF 0.23
%ile 38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.90TaAffx.5827.1.S1_atCA697733--8e-1At3g04990-O.I.H.G.S.X.
0.4058.40.92Ta.5530.3.A1_atCA630457--4e+0At3g27090-O.I.H.G.S.X.
0.2939.20.91TaAffx.78107.1.S1_s_atCA737422--3e+0At5g47550cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.2430.30.91Ta.2016.2.S1_atCA670830--2e+0At3g45851unknown proteinO.I.H.G.S.X.
0.2125.50.91TaAffx.109318.1.S1_atCA677119--4e+0At2g14560LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)O.I.H.G.S.X.
0.089.40.91Ta.20735.3.A1_atCA641104--1e+0At1g67590remorin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.8GSM250907Tc_7dpi_mock_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM246391SB62_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stemLink to GEO
3.395.0GSM139915Anther pre-meiosis rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.094.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM138199genotype C22 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.893.6GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.893.6GSM250908Tc_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.592.5GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.656.1.A1_at, orthologous to the query gene, TaAffx.5827.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5369.1ZmAffx.656.1.A1_atAt3g04990--8e-1At5g57310unknown proteinO.I.H.G.S.X.
0.6179.5RPTR-Zm-X17220-1_atAt3g04990--O.I.H.G.S.X.
0.6179.5RPTR-Zm-J01636-1_atAt3g04990--O.I.H.G.S.X.
0.5267.3Zm.16562.1.S1_atAt3g04990--6e-3At2g17220protein kinase, putativeO.I.H.G.S.X.
0.5065.7RPTR-Zm-J01347-4_atAt3g04990--O.I.H.G.S.X.
0.4861.3Zm.17767.1.A1_atAt3g04990hypothetical protein LOC100191424-4e-1At2g14365LCR84 (Low-molecular-weight cysteine-rich 84)O.I.H.G.S.X.
0.4759.9ZmAffx.25.1.S1_atAt3g04990Translation initiation factor IF-2-like-3e+0At1g10230ASK18 (ARABIDOPSIS SKP1-LIKE 18)O.I.H.G.S.X.
0.4658.4Zm.144.1.S1_x_atAt3g04990metallothionein2-2e+1At5g38344transmembrane receptorO.I.H.G.S.X.
0.4251.3Zm.17754.1.A1_atAt3g04990--2e+0At4g17310unknown proteinO.I.H.G.S.X.
0.3945.6Zm.12244.2.S1_atAt3g04990--9e-1At5g46940invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3641.3Zm.13661.1.A1_atAt3g04990--2e+0At4g25710kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3029.8Zm.17312.1.A1_atAt3g04990--5e+0At5g39700MYB89 (myb domain protein 89)O.I.H.G.S.X.
0.2521.3Zm.6672.1.S1_atAt3g04990Blue copper protein-4e-1At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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