Co-expression analysis

Gene ID	TaAffx.57986.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g19270: unknown protein (HF=5e-1)
Module size	23 genes
NF	0.26
%ile	43.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	0.89	TaAffx.57986.1.S1_at	CA623338	-	-	5e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	Ta.1553.1.S1_at	CD452414	-	-	1e+0	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.38625.1.S1_at	BJ224452	-	-	6e-2	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	TaAffx.128748.3.S1_at	CA654733	-	-	1e+0	At4g33980	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	TaAffx.16699.2.S1_x_at	CA682179	-	-	4e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	TaAffx.105769.1.S1_at	CA730148	-	-	3e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	TaAffx.112839.2.S1_at	CA620441	-	-	4e+0	At2g06960	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.119035.1.A1_at	BJ295436	-	-	1e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	TaAffx.56849.1.S1_at	CA642563	-	-	1e+0	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	TaAffx.64474.2.S1_at	BJ289837	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.92	TaAffx.119231.1.S1_at	BJ281875	-	-	4e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	Ta.25306.1.S1_at	CK153489	-	-	2e-1	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.91	TaAffx.111762.1.S1_at	CA634215	-	-	1e+0	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	Ta.4954.3.S1_a_at	CA713193	-	-	1e+1	At5g18180	Gar1 RNA-binding region family protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.94	Ta.29594.1.S1_at	CA710848	-	-	8e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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