Co-expression analysis

Gene ID TaAffx.57082.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g55508: unknown protein (HF=4e+0)
Module size 6 genes
NF 0.15
%ile 28.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.10.94TaAffx.57082.1.S1_atCA637040--4e+0At5g55508unknown proteinO.I.H.G.S.X.
0.1719.80.94TaAffx.66590.1.A1_atBG909262--1e+1At4g21440ATMYB102 (ARABIDOPSIS MYB-LIKE 102)O.I.H.G.S.X.
0.1112.40.94Ta.7861.1.S1_atCD922623--2e+0At3g63010GID1B (GA INSENSITIVE DWARF1B)O.I.H.G.S.X.
0.1112.40.93TaAffx.12517.1.S1_atBJ257824--1e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1112.40.94TaAffx.30782.1.S1_atCA622085--2e+1At5g55200co-chaperone grpE protein, putativeO.I.H.G.S.X.
0.1112.40.94Ta.1238.3.S1_a_atCA728496--3e-1At1g25472CPuORF54 (Conserved peptide upstream open reading frame 54)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.599.5GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.299.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.999.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.098.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM250908Tc_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250902Tc_7dpi_inoculated_rep1GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM143519Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage