Co-expression analysis

Gene ID TaAffx.57074.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g29970: F-box family protein (HF=8e-1)
Module size 6 genes
NF 0.20
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.90.95TaAffx.57074.1.S1_atCA637160--8e-1At4g29970F-box family proteinO.I.H.G.S.X.
0.6786.30.95Ta.11557.1.S1_atBQ170351--8e+0At3g28920AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34)O.I.H.G.S.X.
0.2735.60.96Ta.24773.1.A1_atCA638705--1e+0At4g03565-O.I.H.G.S.X.
0.2532.10.95Ta.11703.1.S1_atBQ170627--8e-2At1g69260AFP1 (ABI FIVE BINDING PROTEIN)O.I.H.G.S.X.
0.2329.00.95Ta.6026.2.S1_a_atBJ258455--1e-3At3g20480tetraacyldisaccharide 4'-kinase family proteinO.I.H.G.S.X.
0.089.40.95Ta.6391.1.S1_atCA650853--7e+0At5g55510P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporterO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.099.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.498.2GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.149096.1.A1_at, orthologous to the query gene, TaAffx.57074.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.1PtpAffx.149096.1.A1_atAt4g29970jumonji domain protein-6e-31At1g08620transcription factorO.I.H.G.S.X.
0.5078.6PtpAffx.221077.1.S1_x_atAt4g29970hypothetical protein-1e-23At2g44730transcription factorO.I.H.G.S.X.
0.3255.2PtpAffx.71377.1.S1_atAt4g29970hypothetical protein-6e-6At3g55350unknown proteinO.I.H.G.S.X.
0.3052.0PtpAffx.201598.1.S1_s_atAt4g29970hypothetical protein-5e-16At4g24200-O.I.H.G.S.X.
0.2238.3Ptp.330.1.A1_s_atAt4g29970--3e-26At5g47080CKB1O.I.H.G.S.X.
0.1219.6PtpAffx.113369.1.S1_atAt4g29970NAC domain protein, IPR003441-5e-26At1g33060no apical meristem (NAM) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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