CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.57074.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g29970: F-box family protein (HF=8e-1)

Module size 6 genes

NF 0.20

%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 74.9 0.95 TaAffx.57074.1.S1_at CA637160 - - 8e-1 At4g29970 F-box family protein O.I. H.G. S.X.
0.67 86.3 0.95 Ta.11557.1.S1_at BQ170351 - - 8e+0 At3g28920 AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34) O.I. H.G. S.X.
0.27 35.6 0.96 Ta.24773.1.A1_at CA638705 - - 1e+0 At4g03565 - O.I. H.G. S.X.
0.25 32.1 0.95 Ta.11703.1.S1_at BQ170627 - - 8e-2 At1g69260 AFP1 (ABI FIVE BINDING PROTEIN) O.I. H.G. S.X.
0.23 29.0 0.95 Ta.6026.2.S1_a_at BJ258455 - - 1e-3 At3g20480 tetraacyldisaccharide 4'-kinase family protein O.I. H.G. S.X.
0.08 9.4 0.95 Ta.6391.1.S1_at CA650853 - - 7e+0 At5g55510 P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.0 99.9 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
6.4 98.2 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
5.3 97.6 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psZO010iG10r_s_at, orthologous to the query gene, TaAffx.57074.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.85 92.8 PsAffx.psZO010iG10r_s_at At4g29970 - - 3e+0 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.67 86.1 PsAffx.C40000041_at At4g29970 - - 2e-1 At3g19900 unknown protein O.I. H.G. S.X.
0.58 78.8 PsAffx.CL720Contig1_at At4g29970 - - 8e+0 At3g43574 unknown protein O.I. H.G. S.X.
0.52 73.1 PsAffx.CL2001Contig1_at At4g29970 - - 4e+0 At1g25250 AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16) O.I. H.G. S.X.
0.52 73.1 PsAffx.C67000061_s_at At4g29970 - - 8e-1 At5g52200 unknown protein O.I. H.G. S.X.
0.50 71.7 PsAffx.C215000004_at At4g29970 - - 8e-2 At3g53470 unknown protein O.I. H.G. S.X.
0.50 71.7 PsAffx.C103000011_at At4g29970 - - 4e+0 At5g63905 unknown protein O.I. H.G. S.X.
0.43 60.6 PsAffx.C135000021_at At4g29970 - - 4e-2 At5g42790 PAF1 O.I. H.G. S.X.
0.40 57.1 GmaAffx.35370.1.S1_s_at At4g29970 - - 1e+1 At5g47455 unknown protein O.I. H.G. S.X.
0.40 57.1 PsAffx.C277000003_s_at At4g29970 - - 8e-2 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) O.I. H.G. S.X.
0.39 54.5 PsAffx.C200000014_at At4g29970 - - 1e-1 At3g14130 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative O.I. H.G. S.X.
0.33 46.1 PsAffx.C29000074_at At4g29970 - - 5e+0 At5g35475 - O.I. H.G. S.X.
0.25 32.6 PsAffx.CL357Contig1_at At4g29970 - - 7e+0 At4g24230 ACBP3 (ACYL-COA-BINDING DOMAIN 3) O.I. H.G. S.X.
0.22 28.1 PsAffx.CL1416Contig1_at At4g29970 - - 1e-8 At2g34250 protein transport protein sec61, putative O.I. H.G. S.X.
0.21 26.6 PsAffx.C257000015_s_at At4g29970 - - 2e+0 At4g01750 RGXT2 (rhamnogalacturonan xylosyltransferase 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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