Co-expression analysis

Gene ID TaAffx.57074.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g29970: F-box family protein (HF=8e-1)
Module size 6 genes
NF 0.20
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.90.95TaAffx.57074.1.S1_atCA637160--8e-1At4g29970F-box family proteinO.I.H.G.S.X.
0.6786.30.95Ta.11557.1.S1_atBQ170351--8e+0At3g28920AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34)O.I.H.G.S.X.
0.2735.60.96Ta.24773.1.A1_atCA638705--1e+0At4g03565-O.I.H.G.S.X.
0.2532.10.95Ta.11703.1.S1_atBQ170627--8e-2At1g69260AFP1 (ABI FIVE BINDING PROTEIN)O.I.H.G.S.X.
0.2329.00.95Ta.6026.2.S1_a_atBJ258455--1e-3At3g20480tetraacyldisaccharide 4'-kinase family proteinO.I.H.G.S.X.
0.089.40.95Ta.6391.1.S1_atCA650853--7e+0At5g55510P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporterO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.099.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.498.2GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psZO010iG10r_s_at, orthologous to the query gene, TaAffx.57074.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8592.8PsAffx.psZO010iG10r_s_atAt4g29970--3e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.6786.1PsAffx.C40000041_atAt4g29970--2e-1At3g19900unknown proteinO.I.H.G.S.X.
0.5878.8PsAffx.CL720Contig1_atAt4g29970--8e+0At3g43574unknown proteinO.I.H.G.S.X.
0.5273.1PsAffx.CL2001Contig1_atAt4g29970--4e+0At1g25250AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)O.I.H.G.S.X.
0.5273.1PsAffx.C67000061_s_atAt4g29970--8e-1At5g52200unknown proteinO.I.H.G.S.X.
0.5071.7PsAffx.C215000004_atAt4g29970--8e-2At3g53470unknown proteinO.I.H.G.S.X.
0.5071.7PsAffx.C103000011_atAt4g29970--4e+0At5g63905unknown proteinO.I.H.G.S.X.
0.4360.6PsAffx.C135000021_atAt4g29970--4e-2At5g42790PAF1O.I.H.G.S.X.
0.4057.1GmaAffx.35370.1.S1_s_atAt4g29970--1e+1At5g47455unknown proteinO.I.H.G.S.X.
0.4057.1PsAffx.C277000003_s_atAt4g29970--8e-2At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)O.I.H.G.S.X.
0.3954.5PsAffx.C200000014_atAt4g29970--1e-1At3g14130(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.3346.1PsAffx.C29000074_atAt4g29970--5e+0At5g35475-O.I.H.G.S.X.
0.2532.6PsAffx.CL357Contig1_atAt4g29970--7e+0At4g24230ACBP3 (ACYL-COA-BINDING DOMAIN 3)O.I.H.G.S.X.
0.2228.1PsAffx.CL1416Contig1_atAt4g29970--1e-8At2g34250protein transport protein sec61, putativeO.I.H.G.S.X.
0.2126.6PsAffx.C257000015_s_atAt4g29970--2e+0At4g01750RGXT2 (rhamnogalacturonan xylosyltransferase 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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