Co-expression analysis

Gene ID TaAffx.57044.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g32480: oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (HF=1e+1)
Module size 6 genes
NF 0.10
%ile 21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4362.20.80TaAffx.57044.1.S1_atCA637731--1e+1At1g32480oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorO.I.H.G.S.X.
0.4464.50.82Ta.8884.1.A1_atBQ162561--3e-1At3g23680F-box family protein-relatedO.I.H.G.S.X.
0.2633.60.80Ta.9334.2.S1_atCA608488--1e+0At4g30064LCR61 (Low-molecular-weight cysteine-rich 61)O.I.H.G.S.X.
0.1719.80.80Ta.18801.1.S1_atCA642342--1e-1At2g47540pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.1011.30.80Ta.26450.1.A1_s_atCD490882--3e-2At1g70700TIFY7O.I.H.G.S.X.
0.034.70.80Ta.26188.1.A1_atCD452630--6e-1At3g02720DJ-1 family protein / protease-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.9GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM111243genotype C10 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
6.898.4GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.898.4GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.498.2GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.897.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.58824.1.A1_at, orthologous to the query gene, TaAffx.57044.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4875.4PtpAffx.58824.1.A1_atAt1g32480--7e+0At5g02680ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.1321.6PtpAffx.218328.1.S1_atAt1g32480hypothetical protein-2e+0At1g55770invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.0812.9PtpAffx.209761.1.S1_atAt1g32480hypothetical protein-7e-1At1g32540LOL1 (LSD ONE LIKE 1)O.I.H.G.S.X.
0.058.3PtpAffx.82251.1.A1_atAt1g32480hypothetical protein-1e-3At4g33060peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.046.9PtpAffx.201754.1.S1_atAt1g32480hypothetical protein-2e+0At5g02220unknown proteinO.I.H.G.S.X.
0.046.9PtpAffx.207514.1.S1_atAt1g32480hypothetical protein-1e-1At1g24250paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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