Co-expression analysis

Gene ID	TaAffx.57044.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g32480: oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (HF=1e+1)
Module size	6 genes
NF	0.10
%ile	21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	62.2	0.80	TaAffx.57044.1.S1_at	CA637731	-	-	1e+1	At1g32480	oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.82	Ta.8884.1.A1_at	BQ162561	-	-	3e-1	At3g23680	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.80	Ta.9334.2.S1_at	CA608488	-	-	1e+0	At4g30064	LCR61 (Low-molecular-weight cysteine-rich 61)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.80	Ta.18801.1.S1_at	CA642342	-	-	1e-1	At2g47540	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.80	Ta.26450.1.A1_s_at	CD490882	-	-	3e-2	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.80	Ta.26188.1.A1_at	CD452630	-	-	6e-1	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM111243	genotype C10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.8	98.4	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, EBro08_SQ007_D20_at, orthologous to the query gene, TaAffx.57044.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	74.9	EBro08_SQ007_D20_at	At1g32480	-	-	2e-1	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig1889_at	At1g32480	-	-	3e-3	At3g27280	ATPHB4 (PROHIBITIN 4)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig8650_at	At1g32480	-	-	5e-17	At4g11980	ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig23526_at	At1g32480	-	-	4e+0	At4g26870	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	HVSMEa0004I10f2_s_at	At1g32480	-	-	2e-4	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	HV_CEb0015K08r2_at	At1g32480	-	-	5e+0	At3g48840	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig25250_at	At1g32480	-	-	5e+0	At4g28780	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig15380_at	At1g32480	-	-	2e-7	At4g31770	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig14059_at	At1g32480	-	-	6e-12	At3g01650	RGLG1 (RING domain Ligase1)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig13890_at	At1g32480	-	-	3e-32	At3g46920	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig16881_at	At1g32480	-	-	1e-1	At2g01460	ATP binding / kinase	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig20427_at	At1g32480	-	-	1e+0	At2g48100	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig5046_at	At1g32480	-	-	3e-6	At3g45280	SYP72 (SYNTAXIN OF PLANTS 72)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig7556_s_at	At1g32480	-	-	5e-1	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig11257_at	At1g32480	-	-	2e+0	At1g16040	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig5364_at	At1g32480	-	-	1e+0	At5g63250	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig5048_s_at	At1g32480	-	-	8e-2	At1g20600	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.11	9.4	EBro02_SQ007_A14_at	At1g32480	-	-	7e-1	At1g03960	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig3167_s_at	At1g32480	-	-	1e-7	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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