Co-expression analysis

Gene ID TaAffx.57044.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g32480: oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (HF=1e+1)
Module size 6 genes
NF 0.10
%ile 21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4362.20.80TaAffx.57044.1.S1_atCA637731--1e+1At1g32480oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorO.I.H.G.S.X.
0.4464.50.82Ta.8884.1.A1_atBQ162561--3e-1At3g23680F-box family protein-relatedO.I.H.G.S.X.
0.2633.60.80Ta.9334.2.S1_atCA608488--1e+0At4g30064LCR61 (Low-molecular-weight cysteine-rich 61)O.I.H.G.S.X.
0.1719.80.80Ta.18801.1.S1_atCA642342--1e-1At2g47540pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.1011.30.80Ta.26450.1.A1_s_atCD490882--3e-2At1g70700TIFY7O.I.H.G.S.X.
0.034.70.80Ta.26188.1.A1_atCD452630--6e-1At3g02720DJ-1 family protein / protease-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.9GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM111243genotype C10 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
6.898.4GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.898.4GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.498.2GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.897.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g32480, orthologous to the query gene, TaAffx.57044.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g32480840142oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorF:oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:metabolic process;C:unknown;BOMFAPO.I.H.G.S.X.
0.7284.8At1g74480843789RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.6882.2At5g16430831504-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6781.6At1g55790842028ATP binding / nucleotide binding / phenylalanine-tRNA ligaseF:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOBO.I.H.G.S.X.
0.6781.6At4g23090828408unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.6At2g20660816594RALFL14 (ralf-like 14)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.H.G.S.X.
0.6478.9At2g22070816742pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.5873.8At4g16090827294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.5773.8At3g26620822274LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23)F:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.5673.0At3g49280824089transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.0At3g14490820672terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;POO.I.H.G.S.X.
0.5469.5At1g65120842819ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBVO.I.H.G.S.X.
0.5469.5At4g10845826681unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.5469.5At3g274503768952-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.6At5g38500833838DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.5267.4At1g32390840132transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.4At1g65210842828-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.5166.3At1g517503767436transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.3At1g10710837614-Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene.O.I.H.G.S.X.
0.5065.3At5g37640833742UBQ9polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements.O.I.H.G.S.X.
0.5065.3At4g31520829279SDA1 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.4963.5At2g43730818975lectin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4963.5At1g50680841490AP2 domain-containing transcription factor, putativeF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POVO.I.H.G.S.X.
0.4761.2At3g59180825087-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4761.2At2g076863768051transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.8At3g55210824687anac063 (Arabidopsis NAC domain containing protein 63)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POO.I.H.G.S.X.
0.4659.8At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAO.I.H.G.S.X.
0.4457.2At1g43600840944NLI interacting factor (NIF) family proteinF:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPVO.I.H.G.S.X.
0.4457.2At5g08490830748pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.4050.8At2g35970818170harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.8At2g056403768197transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.4At3g55780824744glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.3948.4At2g33010817863ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.3846.7At3g57900824959unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.7At5g66370836769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.H.G.S.X.
0.3745.0At5g401303771383-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.6At5g18160831934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.8At1g18050838385SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3338.1At3g24850822083DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.7At5g60320836154lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.3133.8At2g38150818393transferase/ transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:endomembrane system, Golgi stack;MPBOFO.I.H.G.S.X.
0.3032.1At2g32310817792-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.2930.3At1g11690837713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.2830.3At2g077373768151transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.2At4g18090827534unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPO.I.H.G.S.X.
0.2522.6At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2014.4At1g43680840955-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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