Co-expression analysis

Gene ID TaAffx.56255.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g57400: unknown protein (HF=1e+1)
Module size 6 genes
NF 0.04
%ile 12.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.85TaAffx.56255.1.S1_atCA655112--1e+1At5g57400unknown proteinO.I.H.G.S.X.
0.1314.60.94Ta.13308.2.S1_x_atCA646875--8e-11At3g29090pectinesterase family proteinO.I.H.G.S.X.
0.067.60.94TaAffx.85527.1.S1_atCA654072--2e-4At1g53320AtTLP7 (TUBBY LIKE PROTEIN 7)O.I.H.G.S.X.
0.067.60.95TaAffx.59424.1.S1_atCA600687--3e-4At5g35730EXS family protein / ERD1/XPR1/SYG1 family proteinO.I.H.G.S.X.
0.023.60.95Ta.13635.2.S1_a_atCA499433--1e-11At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.023.60.94TaAffx.55637.1.S1_atCA607422--1e+0At2g28800ALB3 (ALBINO 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.998.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.398.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM143505Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.795.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM324489Si- B+ rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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