CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.55653.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g20030: RNA recognition motif (RRM)-containing protein (HF=1e+1)

Module size 6 genes

NF 0.67

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 76.8 0.96 TaAffx.55653.1.S1_at CA663094 - - 1e+1 At4g20030 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.83 93.4 0.96 TaAffx.4857.1.S1_at CA730111 - - 4e+0 At1g77682 - O.I. H.G. S.X.
0.80 92.2 0.96 TaAffx.79437.1.S1_at CA715704 - - 3e+0 At1g02680 TAF13 (TBP-ASSOCIATED FACTOR 13) O.I. H.G. S.X.
0.55 76.8 0.97 TaAffx.118620.1.S1_at BJ316617 - - 1e+0 At2g31560 unknown protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.73323.1.S1_at CA713945 - - 3e+0 At5g45870 Bet v I allergen family protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.3664.1.S1_at CD876496 - - 2e+0 At2g47710 universal stress protein (USP) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.1 99.0 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.9 99.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7 98.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.3 97.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM298093 Crown tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM143524 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the maize gene, Zm.6532.1.A1_at, orthologous to the query gene, TaAffx.55653.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.6532.1.A1_at At4g20030 abscisic stress protein homolog - 1e-1 At1g62060 unknown protein O.I. H.G. S.X.
0.31 31.6 Zm.17819.1.A1_at At4g20030 hypothetical protein LOC100216744 - 5e+0 At5g18000 transcriptional factor B3 family protein O.I. H.G. S.X.
0.27 24.6 Zm.10333.1.A1_at At4g20030 hypothetical protein LOC100279061 - 7e+0 At4g15460 glycine-rich protein O.I. H.G. S.X.
0.05 1.9 Zm.9752.1.A1_at At4g20030 hypothetical protein LOC100279701 - 2e+0 At5g05370 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative O.I. H.G. S.X.
0.05 1.9 Zm.3058.1.A1_at At4g20030 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform - 6e-36 At3g27300 G6PD5 (glucose-6-phosphate dehydrogenase 5) O.I. H.G. S.X.
0.03 1.1 ZmAffx.397.1.S1_at At4g20030 - - 3e+0 At5g63870 PP7 (SERINE/THREONINE PHOSPHATASE 7) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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