CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.55653.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g20030: RNA recognition motif (RRM)-containing protein (HF=1e+1)

Module size 6 genes

NF 0.67

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 76.8 0.96 TaAffx.55653.1.S1_at CA663094 - - 1e+1 At4g20030 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.83 93.4 0.96 TaAffx.4857.1.S1_at CA730111 - - 4e+0 At1g77682 - O.I. H.G. S.X.
0.80 92.2 0.96 TaAffx.79437.1.S1_at CA715704 - - 3e+0 At1g02680 TAF13 (TBP-ASSOCIATED FACTOR 13) O.I. H.G. S.X.
0.55 76.8 0.97 TaAffx.118620.1.S1_at BJ316617 - - 1e+0 At2g31560 unknown protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.73323.1.S1_at CA713945 - - 3e+0 At5g45870 Bet v I allergen family protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.3664.1.S1_at CD876496 - - 2e+0 At2g47710 universal stress protein (USP) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.1 99.0 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.9 99.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7 98.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.3 97.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM298093 Crown tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM143524 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g20030, orthologous to the query gene, TaAffx.55653.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.61 76.7 At4g20030 827748 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOBA O.I. H.G. S.X.
0.73 85.5 At2g32090 817769 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOFMA O.I. H.G. S.X.
0.50 65.3 At1g62040 842499 ATG8C (autophagy 8c) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. H.G. S.X.
0.48 62.5 At2g19350 816452 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. H.G. S.X.
0.40 50.8 At5g25760 832645 PEX4 (PEROXIN4) mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. O.I. H.G. S.X.
0.29 30.3 At1g28250 839719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.27 26.2 At5g10810 830948 ATER enhancer of rudimentary homolog ATER O.I. H.G. S.X.
0.24 20.7 At1g60870 842379 MEE9 (maternal effect embryo arrest 9) F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen development;C:plasma membrane;VFBPMO O.I. H.G. S.X.
0.22 17.5 At1g77710 844107 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. H.G. S.X.
0.20 14.4 At5g62575 836378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.15 7.8 At4g09550 826539 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.10 3.4 At1g66890 843007 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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