Co-expression analysis

Gene ID	TaAffx.55593.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g06960: small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative (HF=2e-1)
Module size	20 genes
NF	0.08
%ile	19.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.1	0.83	TaAffx.55593.1.S1_at	CA663890	-	-	2e-1	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.90	Ta.12406.2.A1_at	CA696421	-	-	4e+0	At1g72030	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.84768.1.S1_at	CA629526	-	-	4e+0	At3g44704	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	Ta.4777.2.A1_at	CA604939	-	-	4e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.87	TaAffx.105294.1.S1_at	CA736582	-	-	1e+1	At3g60270	uclacyanin, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.89	TaAffx.19534.1.S1_at	CA678840	-	-	4e+0	At2g03440	nodulin-related	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	Ta.28591.3.S1_at	CA669352	-	-	4e+0	At5g03345	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	TaAffx.107813.1.S1_at	CA694939	-	-	4e+0	At5g47830	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	Ta.9049.2.A1_at	CA606630	-	-	3e-1	At2g19480	NAP1	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.87	Ta.19689.1.S1_at	CA656300	-	-	4e+0	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.90	TaAffx.110025.1.S1_at	CA665253	-	-	9e-1	At4g11385	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.92	Ta.30535.3.S1_at	CA667549	-	-	1e+0	At5g27889	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.90	Ta.6565.2.A1_at	CA656833	-	-	4e+0	At2g14660	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.94	Ta.24767.3.S1_at	CA737843	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.92	Ta.29468.1.S1_at	CA630486	-	-	1e+0	At2g03937	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.90	Ta.21132.2.S1_at	CA718694	-	-	4e+0	At1g25230	purple acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.90	Ta.24766.2.S1_x_at	CA740892	-	-	1e+1	At5g40430	MYB22 (myb domain protein 22)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.90	TaAffx.57374.1.S1_at	CA630420	-	-	3e-1	At2g20670	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.87	Ta.23093.1.S1_at	CA604801	-	-	3e+0	At2g42390	protein kinase C substrate, heavy chain-related	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.87	TaAffx.120336.1.A1_at	BJ230785	-	-	4e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.3	99.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.1	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.2	94.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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