Co-expression analysis

Gene ID	TaAffx.55509.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g24120: YSL1 (YELLOW STRIPE LIKE 1) (HF=7e-5)
Module size	13 genes
NF	0.58
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.9	0.95	TaAffx.55509.1.S1_at	CA665154	-	-	7e-5	At4g24120	YSL1 (YELLOW STRIPE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.95	Ta.4059.1.S1_a_at	BJ263315	-	-	6e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	TaAffx.19824.2.S1_s_at	CA679087	-	-	1e-9	At4g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.3239.2.A1_a_at	CA641606	-	-	4e+0	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.95	TaAffx.19824.1.S1_at	CK214059	-	-	6e-20	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.96	Ta.22677.1.S1_at	CA686817	Leucine-rich repeat protein	-	2e-4	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	TaAffx.113489.3.S1_at	CA692052	-	-	4e+0	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.108337.1.S1_s_at	CA689479	-	-	9e-13	At2g30650	catalytic	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	TaAffx.50947.1.S1_at	CA733029	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.11338.3.S1_a_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.113489.1.S1_at	CA653516	-	-	5e-10	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
9.5	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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