Co-expression analysis

Gene ID TaAffx.55497.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62610: basic helix-loop-helix (bHLH) family protein (HF=3e-1)
Module size 10 genes
NF 0.43
%ile 68.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5678.60.92TaAffx.55497.1.S1_atCA665286--3e-1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5678.60.93TaAffx.59475.1.S1_atCA599957--3e-1At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.5576.80.94TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.4869.00.94TaAffx.112556.1.S1_atCA622998--4e+0At1g67760ATP binding / protein binding / unfolded protein bindingO.I.H.G.S.X.
0.4869.00.94TaAffx.135182.1.S1_x_atCA673772--2e+1At5g23640unknown proteinO.I.H.G.S.X.
0.4260.90.94Ta.16453.1.S1_atCA606648--1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.4260.90.94TaAffx.64914.1.S1_atBJ270115--4e+0At1g51915cryptdin protein-relatedO.I.H.G.S.X.
0.3549.80.95Ta.19591.2.A1_a_atCA651113--4e+0At5g11500unknown proteinO.I.H.G.S.X.
0.3346.90.93TaAffx.120617.1.S1_atBJ212756--4e+0At2g39470PPL2 (PsbP-like protein 2)O.I.H.G.S.X.
0.2735.60.93TaAffx.51911.1.S1_atCA716547--3e+0At1g78300GRF2 (GENERAL REGULATORY FACTOR 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.799.5GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
13.199.4GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
10.399.2GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
9.399.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.697.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.595.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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