Co-expression analysis

Gene ID TaAffx.55189.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g37950: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1)
Module size 7 genes
NF 0.25
%ile 40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.92TaAffx.55189.2.S1_atCA669872--9e-1At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5072.40.95Ta.13695.3.S1_x_atCA699811--4e+0At3g56130biotin/lipoyl attachment domain-containing proteinO.I.H.G.S.X.
0.4464.50.95Ta.24621.2.S1_x_atCA640800--4e+0At5g47080CKB1O.I.H.G.S.X.
0.4058.40.94TaAffx.113218.1.S1_atCA617187--5e-3At5g42050-O.I.H.G.S.X.
0.2939.20.95TaAffx.16699.2.S1_x_atCA682179--4e+0At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.1011.30.94TaAffx.108876.1.S1_atCA684367--2e+0At4g05350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.089.40.94TaAffx.54536.1.S1_x_atCA680299--2e-1At2g38340AP2 domain-containing transcription factor, putative (DRE2B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.899.8GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
15.999.6GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
12.499.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.098.8GSM324492Si+ B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.598.6GSM324490Si+ B- rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.298.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM324489Si- B+ rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.996.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM143525Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0828100, orthologous to the query gene, TaAffx.55189.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7793.1Os01g0828100At2g37950-Conserved hypothetical protein2e-12At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.6787.2Os01g0338600At2g37950-Conserved hypothetical protein6e-29At2g43945unknown proteinO.I.H.G.S.X.
0.6483.4Os01g0749400At2g37950-Glycosyl transferase, family 20 domain containingprotein2e-12At1g06410ATTPS7O.I.H.G.S.X.
0.5676.3Os04g0235600At2g37950-ATP synthase B chain (EC 3.6.3.14) (Subunit I)2e-42Atcg00130-O.I.H.G.S.X.
0.5676.3Os01g0792400At2g37950-Photosystem I assembly protein ycf42e-53Atcg00520-O.I.H.G.S.X.
0.5168.7Os12g0283900At2g37950-Protein prenyltransferase domain containingprotein2e-11At3g46610pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5168.7Os06g0598500At2g37950-Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)0Atcg00490-O.I.H.G.S.X.
0.4660.9Os06g0155600At2g37950-Peptidase S16, lon protease family protein1e+0At3g10420sporulation protein-relatedO.I.H.G.S.X.
0.4660.9Os07g0646600At2g37950-Conserved hypothetical protein2e-1At1g52220-O.I.H.G.S.X.
0.4152.4Os11g0642800At2g37950-Glutathione synthetase5e-9At5g27380GSH2 (GLUTATHIONE SYNTHETASE 2)O.I.H.G.S.X.
0.4051.1Os05g0295200At2g37950-Abortive infection protein family protein1e+0At3g07390AIR12O.I.H.G.S.X.
0.3644.0Os08g0566400At2g37950-Carbohydrate kinase, PfkB family protein1e-12At4g28706pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.3440.0Os09g0454100At2g37950-Rhomboid-like protein family protein3e+0At2g33810SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)O.I.H.G.S.X.
0.2625.6Os07g0264800At2g37950-GCN5-related N-acetyltransferase domain containingprotein2e+0At3g13950unknown proteinO.I.H.G.S.X.
0.2321.2Os08g0152700At2g37950-Diacylglycerol kinase, catalytic region domaincontaining protein3e-10At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.1915.1Os09g0240500At2g37950-Sulfate transporter 4.1, chloroplast precursor(AST82)2e-15At5g13550SULTR4O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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