CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.55189.2.S1_at

Gene name
Homology with Arabidopsis Similar to At2g37950: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1)

Module size 7 genes

NF 0.25

%ile 40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.92 TaAffx.55189.2.S1_at CA669872 - - 9e-1 At2g37950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 72.4 0.95 Ta.13695.3.S1_x_at CA699811 - - 4e+0 At3g56130 biotin/lipoyl attachment domain-containing protein O.I. H.G. S.X.
0.44 64.5 0.95 Ta.24621.2.S1_x_at CA640800 - - 4e+0 At5g47080 CKB1 O.I. H.G. S.X.
0.40 58.4 0.94 TaAffx.113218.1.S1_at CA617187 - - 5e-3 At5g42050 - O.I. H.G. S.X.
0.29 39.2 0.95 TaAffx.16699.2.S1_x_at CA682179 - - 4e+0 At5g36130 cytochrome P450 family O.I. H.G. S.X.
0.10 11.3 0.94 TaAffx.108876.1.S1_at CA684367 - - 2e+0 At4g05350 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.08 9.4 0.94 TaAffx.54536.1.S1_x_at CA680299 - - 2e-1 At2g38340 AP2 domain-containing transcription factor, putative (DRE2B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.8 99.8 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
15.9 99.6 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
12.4 99.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.0 98.8 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.5 98.6 GSM324490 Si+ B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.2 98.5 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.4 96.8 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9 96.1 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM143525 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3 95.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig25891_at, orthologous to the query gene, TaAffx.55189.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig25891_at At2g37950 - - 1e+0 At1g30350 pectate lyase family protein O.I. H.G. S.X.
0.67 84.7 Contig9355_s_at At2g37950 - - 7e+0 At5g55510 P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter O.I. H.G. S.X.
0.61 78.7 Contig10038_at At2g37950 - - 3e-15 At1g68410 protein phosphatase 2C-related / PP2C-related O.I. H.G. S.X.
0.50 66.9 Contig5839_at At2g37950 - - 4e-1 At5g46490 disease resistance protein (TIR-NBS class), putative O.I. H.G. S.X.
0.47 62.2 Contig13164_at At2g37950 - - 2e+0 At5g60553 - O.I. H.G. S.X.
0.21 22.6 Contig9449_s_at At2g37950 - - 3e-18 At2g27350 OTU-like cysteine protease family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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