Co-expression analysis

Gene ID TaAffx.55189.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g37950: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1)
Module size 7 genes
NF 0.25
%ile 40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.92TaAffx.55189.2.S1_atCA669872--9e-1At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5072.40.95Ta.13695.3.S1_x_atCA699811--4e+0At3g56130biotin/lipoyl attachment domain-containing proteinO.I.H.G.S.X.
0.4464.50.95Ta.24621.2.S1_x_atCA640800--4e+0At5g47080CKB1O.I.H.G.S.X.
0.4058.40.94TaAffx.113218.1.S1_atCA617187--5e-3At5g42050-O.I.H.G.S.X.
0.2939.20.95TaAffx.16699.2.S1_x_atCA682179--4e+0At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.1011.30.94TaAffx.108876.1.S1_atCA684367--2e+0At4g05350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.089.40.94TaAffx.54536.1.S1_x_atCA680299--2e-1At2g38340AP2 domain-containing transcription factor, putative (DRE2B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.899.8GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
15.999.6GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
12.499.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.098.8GSM324492Si+ B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.598.6GSM324490Si+ B- rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.298.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM324489Si- B+ rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.996.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM143525Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37950, orthologous to the query gene, TaAffx.55189.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6579.6At2g37950818372zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFO.I.H.G.S.X.
0.9797.6At1g30750839955unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVO.I.H.G.S.X.
0.9496.7At1g61590842455protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.H.G.S.X.
0.9496.7At5g66390836771peroxidase 72 (PER72) (P72) (PRXR8)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.H.G.S.X.
0.9296.0At2g27370817280integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9296.0At2g32300817791UCC1 (UCLACYANIN 1)Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.O.I.H.G.S.X.
0.9296.0At2g39430818528disease resistance-responsive protein-related / dirigent protein-relatedF:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFOO.I.H.G.S.X.
0.9195.6At2g36100818183integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9095.1At3g11550820328integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9095.1At4g02090827380unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.8994.6At1g71740843504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8994.6At4g20140827760GSO1 (GASSHO1)Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.O.I.H.G.S.X.
0.8894.0At2g28670817416disease resistance-responsive family protein / fibroin-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVAO.I.H.G.S.X.
0.8894.0At4g13580826991disease resistance-responsive family proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PBO.I.H.G.S.X.
0.8894.0At5g06200830507integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.5At5g57620835866MYB36 (myb domain protein 36)Encodes a putative transcription factor (MYB36).O.I.H.G.S.X.
0.8693.1At2g30210817571LAC3 (laccase 3)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.H.G.S.X.
0.8290.9At1g05260837028RCI3 (RARE COLD INDUCIBLE GENE 3)Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.O.I.H.G.S.X.
0.7888.6At4g05170825865DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOMO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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