Co-expression analysis

Gene ID	TaAffx.54376.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g26960: unknown protein (HF=4e+0)
Module size	37 genes
NF	0.32
%ile	52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	94.6	0.87	TaAffx.54376.1.S1_at	CA682436	-	-	4e+0	At4g26960	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.88	TaAffx.53143.1.S1_at	CA696095	-	-	1e+1	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.89	TaAffx.128414.46.S1_at	BE216982	-	-	5e-87	Atcg00490	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.91	TaAffx.121220.2.S1_at	CA677165	Harpin binding protein 1	-	4e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.88	TaAffx.81144.2.S1_at	CA689155	-	-	4e+0	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.90	TaAffx.82941.1.S1_at	CA664642	-	-	2e-8	At5g51660	CPSF160	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.90	TaAffx.106042.1.S1_at	CA725497	-	-	4e+0	At3g18773	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.88	TaAffx.108170.4.S1_at	CA689645	-	-	2e+1	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.89	TaAffx.59680.1.S1_at	CA733434	-	-	1e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.91	TaAffx.106154.2.S1_at	CA725477	-	-	4e+0	At4g30980	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.88	TaAffx.94124.1.A1_at	BG904216	-	-	3e+0	At3g46080	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.89	TaAffx.128414.79.S1_x_at	CA679469	-	-	2e-70	Atcg00490	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.89	TaAffx.54204.1.S1_at	CA684489	-	-	2e+1	At5g13670	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.90	TaAffx.112551.1.S1_at	CA623057	-	-	1e+1	At5g46150	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.90	Ta.20380.1.S1_at	CA679288	-	-	9e-4	At3g58040	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.88	TaAffx.107239.1.S1_at	CA703843	-	-	2e-2	At2g23290	AtMYB70 (myb domain protein 70)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.89	TaAffx.53883.1.S1_at	CA688056	-	-	4e+0	At4g36990	HSF4 (HEAT SHOCK FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.92	TaAffx.91452.1.S1_at	CA610840	-	-	2e+1	At5g54360	zinc finger (C2H2 type) family protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.89	TaAffx.30005.1.S1_at	CA630801	-	-	1e+0	At4g00840	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.91	TaAffx.28107.1.S1_x_at	CA665003	-	-	5e-5	At1g69500	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.90	TaAffx.84515.1.S1_at	CA635080	-	-	4e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.90	TaAffx.7150.1.S1_at	CA667568	-	-	4e+0	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.90	Ta.15808.1.S1_at	CA487067	-	-	1e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.90	TaAffx.112720.1.S1_at	CA621571	-	-	7e-5	At5g39580	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.91	Ta.17502.1.S1_at	CA621329	-	-	3e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.90	TaAffx.114357.1.S1_at	CA594486	-	-	1e+0	At2g45670	calcineurin B subunit-related	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.91	TaAffx.14950.2.S1_at	CA660870	-	-	6e-2	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.89	TaAffx.31447.1.S1_at	CA616189	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	TaAffx.105660.1.S1_at	CA731441	-	-	1e-3	At3g01015	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	TaAffx.50094.2.A1_at	CA736298	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.113024.3.S1_at	CA618057	-	-	3e-1	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.89	TaAffx.30826.1.S1_at	CA621750	-	-	2e-1	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.88	Ta.7769.2.S1_at	CA629824	-	-	4e+0	At1g31772	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.92	TaAffx.27409.1.S1_at	CA677175	-	-	4e+0	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.92	TaAffx.53697.1.S1_x_at	CA689880	Ubiquitin carrier protein	-	9e-1	At1g03470	kinase interacting family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	TaAffx.53587.2.S1_at	CA697989	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.92	TaAffx.50141.2.S1_at	CA745109	-	-	1e+0	At3g24280	SMAP2 (small acidic protein 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.4	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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