Co-expression analysis

Gene ID	TaAffx.54209.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g17442: unknown protein (HF=4e+0)
Module size	12 genes
NF	0.17
%ile	31.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	0.84	TaAffx.54209.1.S1_at	CA684449	-	-	4e+0	At2g17442	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.91	Ta.16190.1.A1_x_at	CA602283	-	-	3e+0	At1g26100	cytochrome B561 family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	Ta.1790.2.S1_a_at	CA698369	-	-	2e+1	Atmg00200	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	TaAffx.80471.1.S1_x_at	CA696665	-	-	3e-7	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.91	Ta.18595.1.S1_at	CA639368	-	-	1e+0	At3g13830	F-box family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.93	TaAffx.15408.1.A1_at	CD453842	-	-	6e-4	At1g49730	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.94	TaAffx.59343.1.S1_at	CA602787	-	-	4e+0	At2g23840	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.93	TaAffx.107742.1.S1_at	CA696088	-	-	2e-2	At1g10420	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	Ta.6155.2.S1_a_at	CA695243	-	-	3e-1	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.93	Ta.6046.2.S1_a_at	CA641644	-	-	5e-9	At5g54870	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.92	TaAffx.110125.1.S1_at	CA663551	-	-	3e+0	At1g21620	APUM20 (Arabidopsis Pumilio 20)	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.94	TaAffx.28702.1.S1_at	BQ789525	-	-	5e+0	At3g06890	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.7	99.6	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
13.6	99.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.4	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.5	97.8	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.5	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.2	96.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0	96.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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