Co-expression analysis

Gene ID TaAffx.54121.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g58470: methyltransferase/ nucleic acid binding (HF=2e-1)
Module size 6 genes
NF 0.87
%ile 98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.89TaAffx.54121.1.S1_x_atCA685515--2e-1At3g58470methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.9198.20.88TaAffx.54121.1.S1_atCA685515--2e-1At3g58470methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.8092.20.92TaAffx.6514.1.S1_x_atCA745379--2e+0At1g25400unknown proteinO.I.H.G.S.X.
0.8092.20.93Ta.30935.1.S1_atCN010703--9e-1At2g17450RHA3AO.I.H.G.S.X.
0.7389.10.89TaAffx.6514.1.S1_atCA745379--2e+0At1g25400unknown proteinO.I.H.G.S.X.
0.6182.00.86Ta.20972.1.S1_atCA612059--3e+0At5g60890MYB34 (MYB DOMAIN PROTEIN 34)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM298058Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
20.699.7GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
13.599.5GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
13.599.5GSM298066Leaf tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.998.7GSM298053Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.198.5GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.898.4GSM298054Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.698.3GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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