Co-expression analysis

Gene ID	TaAffx.54121.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g58470: methyltransferase/ nucleic acid binding (HF=2e-1)
Module size	6 genes
NF	0.87
%ile	98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.89	TaAffx.54121.1.S1_x_at	CA685515	-	-	2e-1	At3g58470	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.88	TaAffx.54121.1.S1_at	CA685515	-	-	2e-1	At3g58470	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	TaAffx.6514.1.S1_x_at	CA745379	-	-	2e+0	At1g25400	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.93	Ta.30935.1.S1_at	CN010703	-	-	9e-1	At2g17450	RHA3A	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.89	TaAffx.6514.1.S1_at	CA745379	-	-	2e+0	At1g25400	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.86	Ta.20972.1.S1_at	CA612059	-	-	3e+0	At5g60890	MYB34 (MYB DOMAIN PROTEIN 34)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.8	99.8	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
20.6	99.7	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
13.5	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
13.5	99.5	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.9	98.7	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM298054	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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