Co-expression analysis

Gene ID	TaAffx.53935.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g09930: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (HF=1e+0)
Module size	10 genes
NF	0.03
%ile	8.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.83	TaAffx.53935.1.S1_at	CA687639	-	-	1e+0	At4g09930	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.86	TaAffx.112249.1.S1_at	CA625615	-	-	4e+0	At3g49100	signal recognition particle 9 kDa protein, putative / SRP9, putative	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.90	Ta.10551.1.S1_at	BQ165974	-	-	5e+0	At2g23160	-	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.89	TaAffx.54285.1.S1_at	CA683424	-	-	2e+1	At5g09978	PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.88	Ta.26886.1.A1_at	CD491579	-	-	7e-2	At5g22660	F-box family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.91	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.88	TaAffx.53894.1.S1_at	CA687992	-	-	4e+0	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.90	Ta.8093.2.S1_a_at	CA615237	-	-	1e-12	At5g65760	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.89	Ta.24493.1.S1_at	CA685684	-	-	2e+0	At1g22065	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.86	TaAffx.108117.1.S1_at	CA691472	-	-	4e+0	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
44.2	99.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
32.1	99.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.0	98.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.3	96.7	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.0	96.3	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9	96.1	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage